RNA id: XR_005036345.1


Basic Information

Item Value
RNA id XR_005036345.1
length 1273
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110486868
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31196917 ~ 31199241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTTAAGACCACCAAGagtcatcattacatcattacacaaGATCAGAAACACTCGTCTCAGAACCATTAGGGTGCGCTTTCTTTTTGGACAGGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTAAGAGTGAGGTGTATGAGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152160 lncRNA downstream 1197 31195366 ~ 31195720 (-) True LOC110486852
TU152095 lncRNA downstream 21497 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA downstream 21497 31172956 ~ 31175420 (-) True G132020
TU152094 lncRNA downstream 44294 31151591 ~ 31152623 (-) False G132020
TU151755 lncRNA downstream 95172 31100979 ~ 31101745 (-) True G131723
TU152165 lncRNA upstream 184 31199404 ~ 31202388 (-) True G132066
TU152176 lncRNA upstream 26038 31225258 ~ 31225789 (-) True G132075
TU152131 lncRNA upstream 29731 31228951 ~ 31229522 (-) True G132055
TU152129 lncRNA upstream 56694 31255914 ~ 31258119 (-) True G132053
TU152191 lncRNA upstream 69955 31269175 ~ 31269380 (-) True G132090
XM_021558683.2 mRNA downstream 742 31192463 ~ 31196175 (-) False LOC110486852
XM_021558664.2 mRNA downstream 5445 31180009 ~ 31191472 (-) True LOC110486838
XM_021558672.2 mRNA downstream 7955 31180009 ~ 31188962 (-) False LOC110486838
XM_021558653.2 mRNA downstream 21387 31172967 ~ 31175530 (-) True LOC110486829
XM_021558595.2 mRNA downstream 43100 31151553 ~ 31153817 (-) True LOC110486775
XM_036945709.1 mRNA upstream 32133 31231353 ~ 31247745 (-) False herpud2
XM_021558762.2 mRNA upstream 32133 31231353 ~ 31248873 (-) False herpud2
XM_021558766.2 mRNA upstream 32133 31231353 ~ 31248873 (-) True herpud2
XM_036945727.1 mRNA upstream 98913 31298133 ~ 31299847 (-) False pkdc
XM_021558825.2 mRNA upstream 98913 31298133 ~ 31299976 (-) True pkdc
TU152142 other downstream 625 31192466 ~ 31196292 (-) False LOC110486852
TU152144 other downstream 1197 31192466 ~ 31195720 (-) False LOC110486852
TU152152 other downstream 1731 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other downstream 1731 31192466 ~ 31195186 (-) False LOC110486852
TU152143 other downstream 1731 31192466 ~ 31195186 (-) False LOC110486852
TU152311 other upstream 336827 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 436100 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1539609 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1539609 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1548988 32748208 ~ 32788121 (-) True G134102

Expression Profile