RNA id: TU152092


Basic Information

Item Value
RNA id TU152092
length 1525
RNA type TUCP
GC content 0.48
exon number 3
gene id LOC110486868
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31196917 ~ 31199241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTAAGAGTGAGGTGTATGAGGTAACTGTGAGAGAATATTGCTGGCTCATTGCAAAATAGTACAGGGGACTCTTTCATTGTTTGTCTGTTTCAACCCTGTTTTTCCTGTTTTAGGTTTGTTTTCAAGTGGCATGCCTTGTTGTCTTGGGGTAAACAGGGTTTATGCTGGTTTGTATcaattaacattatgttttccCAATGGTGCTATTCTGGTTTTGCTTACCTACCACTCCCTCAGTGCTTGCCAGTGTGGCCAGATGACTTGTGACTAAGAGCCTTGCCCAAACTCAGCAGGCCCATTGGCAGGCCAAAGAGACAGCAGGACCAAACACGTGATACAACGACAGACTGCAACAGAACAGCATCCAACCTTCCATCATCCCTTCTCACCACACCTCACTGTTATCGCTCCTCCATCTCATCCCTTCCCCTCCTATCTCTTTATCCACGTTTCAGTCTTCATCTCCCCTATTCCCATTTTTTTGTATGCTCATTAAAGTGCCATCCAACATATAGACATAATGCCATTTGCTTGGTTTCTCCATTCACATGAATCCCTTTAGACATCATCAGTGGTATGAACAGAATAGCTTTTTGTCAAATGTTCTTaggttctctccttctctcctctgtcccctgtgTCTTCAGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152160 lncRNA downstream 1353 31195366 ~ 31195720 (-) True LOC110486852
TU152095 lncRNA downstream 21653 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA downstream 21653 31172956 ~ 31175420 (-) True G132020
TU152094 lncRNA downstream 44450 31151591 ~ 31152623 (-) False G132020
TU151755 lncRNA downstream 95328 31100979 ~ 31101745 (-) True G131723
TU152165 lncRNA upstream 592 31199404 ~ 31202388 (-) True G132066
TU152176 lncRNA upstream 26446 31225258 ~ 31225789 (-) True G132075
TU152131 lncRNA upstream 30139 31228951 ~ 31229522 (-) True G132055
TU152129 lncRNA upstream 57102 31255914 ~ 31258119 (-) True G132053
TU152191 lncRNA upstream 70363 31269175 ~ 31269380 (-) True G132090
XM_021558683.2 mRNA downstream 898 31192463 ~ 31196175 (-) False LOC110486852
XM_021558664.2 mRNA downstream 5601 31180009 ~ 31191472 (-) True LOC110486838
XM_021558672.2 mRNA downstream 8111 31180009 ~ 31188962 (-) False LOC110486838
XM_021558653.2 mRNA downstream 21543 31172967 ~ 31175530 (-) True LOC110486829
XM_021558595.2 mRNA downstream 43256 31151553 ~ 31153817 (-) True LOC110486775
XM_036945709.1 mRNA upstream 32541 31231353 ~ 31247745 (-) False herpud2
XM_021558762.2 mRNA upstream 32541 31231353 ~ 31248873 (-) False herpud2
XM_021558766.2 mRNA upstream 32541 31231353 ~ 31248873 (-) True herpud2
XM_036945727.1 mRNA upstream 99321 31298133 ~ 31299847 (-) False pkdc
XM_021558825.2 mRNA upstream 99321 31298133 ~ 31299976 (-) True pkdc
TU152142 other downstream 781 31192466 ~ 31196292 (-) False LOC110486852
TU152144 other downstream 1353 31192466 ~ 31195720 (-) False LOC110486852
TU152152 other downstream 1887 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other downstream 1887 31192466 ~ 31195186 (-) False LOC110486852
TU152143 other downstream 1887 31192466 ~ 31195186 (-) False LOC110486852
TU152311 other upstream 337235 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 436508 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1540017 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1540017 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1549396 32748208 ~ 32788121 (-) True G134102

Expression Profile