RNA id: XM_036933421.1



Basic Information


Item Value
RNA id XM_036933421.1
length 1111
RNA type mRNA
GC content 0.44
exon number 9
gene id sri
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31199335 ~ 31202392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGTGAATGAAACATAAAATACTGGAATGTGCCTGGAATATACCATTTACTTCCTCGAGTGTTCATTTCATTTTAGCAAAACATACTCTGAAATGAGTTATCCTGGATATGGTGCTCCCGCAGGCGGATACCCAGGAGGGtATGGAGGTGCCCCTGCTGGTGGCCACCCCCCTGGTGGACCTGGCTTTGGAGGATACCCTGGTCAGCAGCAAGACCCTCTCTATGGATATTTTGCTGCTGTTGCAGGCCAGGATGGGCACATATCAGCGGAAGAGCTCCAGCAATGCCTCACACAGGCTAACTTCTCTGGTGGCTACAAACCTTTTAACCTGGAGACCTGCAGACTGATGATCAACATGCTGGATAGAGACATGTCATGTACTATGGGCTTCAACGAGTTCAAGGAGCTGTGGACCGTGCTCAATGGCTGGAAGCAGCACTTCATGTCCATTGATCGTGACCAGAGTGGGACCGTGGACCCCCAGGAGATGCACCAGGCAGTCACTTCCATGGGCTACAGACTGAGCCCACAAGCCATGAACTGCATCATCAAGAGATTCAGTTCTCAGGGGAAGATCACCTTTGATGACTACGTAGCTTGTTGTGTGAAACTCAGAACCCTGACTGATTTGTTCCGAAAGCGGGACCAAGCTGGACAGGGAATGGCCACATTTCCATACGATGATttcatccAGTGCACGATGAGCACATGAAGAGACAGAGCAGAAAAACATCTGAGGGACTACCTCTTAACTCCCAtaatatttacaatttagcatgTGTAAAAATTAATTCTGACATGTATTTTTGATACTCACAAATCGCTTGCATTTTTTGATTGCTTTTATACAAACATGACTAAATAGGAAGTTTTGAAATAGGAAGTTGCTATAAAATTGTAACATTACCTTAGGAAACTGGAATATTTGCCAACTTTAACCACTAGGTGTGCCTATAAACCCGTGTCACCACTGCATGTTCTGTATATTATGTCACTGTTGAAAGTCTTTACTATTCATCATGATAATCAATATATCCCTAAATATAGCTGGGAGTAATTTTgtctgtatgtgaaagagagtAATAAACACAACCATATATGTGGAATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151819 lncRNA upstream 3612 31195378 ~ 31195723 (+) True G131777
TU151810 lncRNA upstream 11020 31188008 ~ 31188315 (+) True G131773
TU151765 lncRNA upstream 23357 31106841 ~ 31175978 (+) True G131731
TU151776 lncRNA upstream 74691 31116142 ~ 31124644 (+) True G131742
TU151753 lncRNA upstream 98370 31100748 ~ 31100965 (+) True G131721
TU151824 lncRNA downstream 5584 31207976 ~ 31208235 (+) True G131782
TU151836 lncRNA downstream 25781 31228173 ~ 31228578 (+) True G131794
TU151861 lncRNA downstream 47227 31249619 ~ 31249833 (+) True G131813
TU151863 lncRNA downstream 49866 31252258 ~ 31252469 (+) True G131815
TU151849 lncRNA downstream 53432 31255824 ~ 31257043 (+) False mxtx2
XM_036945604.1 mRNA upstream 52881 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA upstream 52881 31136810 ~ 31146454 (+) True LOC110486784
XM_036945585.1 mRNA upstream 307949 30873733 ~ 30891386 (+) False LOC110534689
XM_036945587.1 mRNA upstream 307949 30873733 ~ 30891386 (+) True LOC110534689
XM_021619612.2 mRNA upstream 343289 30851297 ~ 30856046 (+) True LOC110534679
XM_021558742.2 mRNA downstream 6593 31208985 ~ 31222079 (+) False LOC110486889
XM_021558750.2 mRNA downstream 6593 31208985 ~ 31222079 (+) True LOC110486889
XM_036945721.1 mRNA downstream 54125 31256517 ~ 31261130 (+) False mxtx2
XM_021558777.2 mRNA downstream 56570 31258962 ~ 31261130 (+) False mxtx2
XM_036945724.1 mRNA downstream 56572 31258964 ~ 31261130 (+) False mxtx2
TU151514 other upstream 449381 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 498712 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1409504 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1505484 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1558239 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 89078 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 158044 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 158044 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 655256 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 655294 31857686 ~ 31883073 (+) True G132342

Expression Profile