RNA id: XM_021558766.2


Basic Information

Item Value
RNA id XM_021558766.2
length 1959
RNA type mRNA
GC content 0.51
exon number 8
gene id herpud2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31231353 ~ 31248873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCAATGGAATATTATGACGTAGTTTCCGGTATCACGCCCGACTCACCAAAAAAAAACTGTCGAACTGGGAAGGAGCAGTCAAAAGGGGTCGAAAATACTCAAATAATCTAAAAACCCCAAGAAACATAGCTGCTTCACTCTCCACCAGGATTACATCGTGATTGGACACAGAACCATCTCCCCGCCAATGACAGCTCTTTAGAGGGGAAAATACCCTGTCCACCACAGTCATTGGCTGAGCTGGACTTGAGATCACAATGATGAAGAGGATCTGAGGGAGTCTTCCTCCTCAGGTGTAGGAGGCGAGCCCTGTCCTTTCCCATCCCCTTGACACACCCATTAATATGAACCATGGACCCAGGAGCAGTTGACAGTCCTGTCACCTTAGTCATCAAGGCCCCCAACCAGAAGTATGACGACCAGACAATAAACTGTTTTCTCAACTGGACGGTAGAGAAACTGAAGAGTCACATCTCGAATGTGTACCCAAGCAAGCCGTCATCCAAGGATCAGCGGCTGGTATACTCAGGCCATCTCCTCCAGGACCACCTGCAACTGAGGGATGTCCTCAGGAAGAGTTCAGACAGTGCTGGCTCCACCCCCCAAGCCACAACACCAAATCAGGACGGTCAGTCCGCTGCCTCAGTAGCAGGAAGTTATGATGGACTAAGGCATCGTGGAGGCTTCCCCCAATTTAACCCTCAAAATCCTACCTCTACTGGTATAATGCAATGGCCAGATGGAACGCAGGTCCCAGTACAGGGGGGTATGGCTGCAGGTGTGCCCCCCCACCCCATGTACATGCCCATGCAGGTCCTCTGGTGGCAGCAAATGTATGCACGCCACTACTACATGCAATAtcAAGCAGCAGTGGCAGCCTCACagcccccctccacccctccctcctcccccagtcCCACCCACTCCCCCCAACCCGCACAGCCCAATGAAGCTCCACCTCCCCTGGGACCTAACCCCATTCAAGAGGACAGGCCGGCCAATCCCAATATCCAGATGAATGCCCAGGGCGGGGCCGTGCTAAATGAGGATGAACTGAACCGGGATTGGCTGGACTGGATGTACGCGGTCTCCCGCGCTGCCATCTTGCTCAGCATTGTGTATTTctactcctcctttggccgcttCGTCATGGTGATAGGCGCCATGCTGCTCGTCTTTTTGCACAGGGCTGGTTGGTTCCCCTTTAGGCCAGAGCTGCAGAACCCCGGAGTAGGAGGAGCGGGGTTAGCTCATCAGGACGAGGCAGAGAGACACCAGGACATCCAGGAGATGGAGCGGATGATGGATGAAGggctggaggatgaggagggcgACAGTGGAGAGGAAGGCCCAGAGGACCCGGCAGCTCCCGCTGCCCCCCGCCACCACGGCTTCCTGGCCTCCGCCTGGTCCTTCATCAGCACCTTCTTCACCTCCCTCATCCCAGAGGGACCCCCCCACCCCGCCAACTAAATCAGGGAGGGAGACCCCACCCCCCAGTAACAACCTCCCATGCTGCCAACTACCAGACTGTAAAAAGTGCTGCAGTGTGGGGGAAGTCTAGAATAAATCAGTGAGCATCGAACAAACTAACATGTTATGCCATGTTAAACAAGCTAACAATGCTTTATATTACAGAGGCTCTGATTTCGTCATACAaaccggtacacacacacactttattaccTTTGATCATGTCTGCTGATTTTGATTTTGGTGGCATTGAAAGGCCTCGAAAGGTCATCCATTGTAAGCAGTGATACAGCCATTGCATTTATCGTTTTGGTTTTGGAGAATAGATGAAAGGACATATACACCTAAATGTGTATGAATATTGCAATGACTCTAGCACATTGATTATCTCTGTGTATATGAGCATGATCtatttacatataaatatatacatcttAATTCCTGACAAAATGCGTTTTTGAATAAAAGCCTTGtggtttcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152131 lncRNA downstream 1831 31228951 ~ 31229522 (-) True G132055
TU152176 lncRNA downstream 5564 31225258 ~ 31225789 (-) True G132075
TU152165 lncRNA downstream 28965 31199404 ~ 31202388 (-) True G132066
TU152160 lncRNA downstream 35633 31195366 ~ 31195720 (-) True LOC110486852
TU152093 lncRNA downstream 55933 31172956 ~ 31175420 (-) True G132020
TU152129 lncRNA upstream 7041 31255914 ~ 31258119 (-) True G132053
TU152191 lncRNA upstream 20302 31269175 ~ 31269380 (-) True G132090
TU152196 lncRNA upstream 23500 31272373 ~ 31275952 (-) True G132095
TU152219 lncRNA upstream 46715 31295588 ~ 31295950 (-) True G132117
TU152220 lncRNA upstream 48155 31297028 ~ 31297310 (-) True G132118
XM_036945646.1 mRNA downstream 32112 31196917 ~ 31199241 (-) False LOC110486868
XM_021558711.2 mRNA downstream 32133 31196917 ~ 31199220 (-) False LOC110486868
XM_036945727.1 mRNA upstream 49260 31298133 ~ 31299847 (-) False pkdc
XM_021558825.2 mRNA upstream 49260 31298133 ~ 31299976 (-) True pkdc
XM_021558814.2 mRNA upstream 68732 31317605 ~ 31352632 (-) True LOC110486940
XM_021558844.2 mRNA upstream 108961 31357834 ~ 31360219 (-) True LOC110486970
XM_021558832.2 mRNA upstream 117456 31366329 ~ 31388549 (-) True LOC110486958
TU152092 other downstream 32541 31197073 ~ 31198812 (-) True LOC110486868
TU152142 other downstream 35061 31192466 ~ 31196292 (-) False LOC110486852
TU152311 other upstream 287174 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 386447 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1489956 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1489956 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1499335 32748208 ~ 32788121 (-) True G134102

Expression Profile