RNA id: XM_036945726.1


Basic Information

Item Value
RNA id XM_036945726.1
length 6248
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110534710
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31262054 ~ 31294577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATGAACCTCCAACTCATTTGAGTCGCTATGCGTCAATACTTAAAACAAATTTACATTCTTAATCCTGTGTACCTAAGTTGCGTGCCTTTCTTAGTATTTCACAGTCCgtggttgtatttgattaacGTTTTATTAAAATGTATGGATTTCAGCAAGCAAAGGCACGCAACAACAAAGAATGCATAGGTTAATTTAAACATTTTGCACCGAGTGAGGTGTTCCTTCGCCATTTTAGCTGCCAGACATCTTGCATTTCCCAACATCTTTGCAGGAGCTAGTTATTTCTATTCGCCTTGGCCACTTGTAGAGGTAGTTGGCAGCGCATCACACATTGCGGCCAAAACAAAGATGTACACACATGCAAGATGCATTTCTCACTTGATATAAAACATGGATGTAATATCTTTCTGAATATTCTGTTTTTTTGGAGAACCATCTGTAACCAGACACAGACATTTTTAAGATACTTTTTTCACTGAAACGAGAACAAAGAAAGTATTGTCAAGGACAGAAAGGAGAAGATGGAGGGGAAGGAGCCAAAGAAGGAACAGAAGCGGCACCAGCAGAAGCACAGCGGGCCCAAGGCGGAGAGGAAGAAGAGCAGGAAGCAGCTGGGAACTCCTGCCGGAGATGACGAGCGCAAGAGGAACCCCAAAGCGTTTGTGGTCCAGTCAGCAATGCGCATGGCCAAAACCTTCCACAGaGCCCAGGACCTAAAGGCCAAGAAGCATCACATACCCTTGGTGGACCGCACCCCTTTAGAGCCTCTCccgatagtggtggtggtggtaggaccCCCCAAGGTGGGCAAGAGCACCCTCATCCGCTGCCTGATCAAAAACTTCACACGGCAGAAACTAGGGGACATCTGCGGGCCTGTGACCATCGTCTCTGGAAAGAAGAGGCGTCTTAACTTCATCGAGTGTAGCAATGACATCAATACAATGATTGACTAGGCAAAGGTTGCTGACGTGGTGCTGATGCTCATTAACGCCAGCTTCGGCTTTGAGATGGAGACCTTTGAGTTCCTCAACATCTGCCAGGTGCACGGCTTCCCGCGCATCATGGGCGTGCTCACCCACCTGGACTCGTTCCGCAATAACAAGGCCCTTCGCAAGACCAAGAAGCGGCTCAAGCATCGCTTCTGGACTGAGGTCTACCAGGGTGCCAAACTCTTCTACCTCTCCGGTATGGTGTACGGGGAGTACCAGACCCAGGAGGTCAAGAACCTGGGCCGCTTCATCTCCGTCATGAAGTTCCGCCCGCTGGTGTGGCAGCAATCTCATCCCTACGTCGTGGCCGACCGCATGGAGGATTTGACGGACCCTGAGATGGTGAGGGTGGACCCCAAGTGTGATCGTACTGTATCTCTCTATGGCTACCTGAGAGGGACATACTTGAAGAATAAAGGCCAGGTCCATATCCCTGGTGTGGGGGACTATGCGGTGGCAGACATCAGCTTCCTGCCAGACCCCTGCGCTCTGCCTGAAGCTCAGAAGAAGAGGGCGCTGAACGAGAAGGAGCGGCTGCTCTACGCTCCCATGGCAGGggtcggggggggggtcgtGTACAATAAGGACGCAGTGTACATCGACCTGCCCGGCGGCCACGTCAATCAAGAACAGGAGGAGGTCCGTCCCACCACAGAGTTGGGCCAATCCCTCATCGGTACACACACCACCCTGGATGCCAAGATGGCCGCCAGCAAAGTCTCACTATTCACAGGGGCGGCTGCCCTGACCCCcggggaagtggaggaggaggagaacggGCTGACGTCAGGACCCCAGGAGAGCCGAGTCTGGGACCctgagacacagcgagagaggaggaaggctgtCTTCACTGAAGAGgaagatgatgacgatgatgacagCGAGGGTAGCAGTGacgaagagggggatgaggaaggagagtctgaagaagaggatgagGGGGAAAACAAAGGGGAAGAAGAAGAACCTGTTATGAAGAAAGAGGCAAAGGACAGAATTGAACCAAAAGAGAAGCAAGGAATAAAGACCATCCCTTCGGTGAAGAGACAGAAGATGGAGGAAAGGAAAGTGGAGAAAGAGCCAGTGGTGGAGGTACCTGCCTTTGCAGACAGTGAGGATGAGCTGGAaatgagtgaggaggaggaaggagaaggggggaagggagagcgggagagtgaaggagaggaaagTGATTCGGAGGGGGAAGACGATGAAGAAGACGGTGCAGTGGAAAAGGGTGATCTCAAACCAATAGACTCGGGTCATTGCTCGGAGGAAGATGCGAGTGATTCAATAGAAGATGACTGTGAAACCAATGTCTCGGGCAAAGAAAGCAAGAAGTCAAATGCCACCTCCAAAAtggaagaggaagatgaggagatggagggaggagagctgTGGTATGAAAGTGCAGGGGCACTGCGGTGGAAGGAGGGTCTGCAACAGAAAGCGTCAGAGGCGTTTCTACGGCAACAGCGCGCCGCCCCCAACCTGCGTAAACTGGTGTACGGCACAGTGGCAGAGGATGATCGTGAtggggaggaggatgaagaggagctGGGAGGGCTGTTTCGAGTCAGCCGCCCCGAGAAGGGCAAGAAGCATCGTGCGGATGGTGTGGACTGCTCCCGTTTTGACCCCGATGCCGCTCGCAATTGGGACCTGGAAGAGATGCTGGACTCGATACGGGGCTGTTTTGTGACGGGGAAATGGGAAGACGATCAAGATGATGCTACATTGCTGAAAGAGGATGAGGAGCTGTATGGCGACTTTGAGGACTTGGAGACAGGGGCAGTGCACAAGGGGAAAGCTGGCAAGCAGAAGGACCAAGCCAAGGAAgaaagtgatgatgatgatgaagaggaggagaagctGATGATGGTGGACAACGAGACCCAGAAGAACAAGCGTCTGGAGAAGAAACGGCGGCTGAAGGAGCGTTTCGACACGGAGTACGACGACGGAGACGCCACCTACTTTGACGACCTCAAGGAGGAGATGCAAAAACAGGCAGAGCTGAACCGGGCTGAGTTTGAGGACGTGGATGACGAGACACGGGTCCAGTACGAGGGCTTCCGGCCTGGCATGTATGTCCGTCTGGAGATCCCCTCCCTGCCCTGCGAGTTTGTCACCAACTTTGACCCCCACTATCCCATCATCTTCGGGGCTCTAGGTGCCAGCGAGGGGAATGTAGGCTACCTGCAGATGCGGTTAAAGAAACATCGGTGGCACAACCGTATCCTGAAAACACGCGACCCTCTCATCCTGTCCCTGGGCTGGCGGCGCTTCCAGACCATCCCCCTGTACCACTTCGAGGACCACAACGGGCGCCACCGCCTGCTCAAGTACACACCACAGCACATGCACTGTGGTGCCACTATCTGGGGTCCCATCACACCTCAGGGCACTGGCTTCCTGGCTGTGCAGTCAGTCGCAGGAACTAAGACCAGTTTCCGCATCGCAGCTACAGGAGTTGTCCTTGACTTGGACAACTCTGTGACCATAGTCAAAAAGCTCAAGCTGATTGGCTACCCATACAAGATCTACAAGAACACATCCTTCATCAAGGGGATGTTCAACACCGTGCTGGAGGTGGCGAAATTCGAAGGGGCTTCCATCCGAACTGTCAGTGGGGTCAGAGGTCAAATTAAGAAGGCCCTGTCAACGCCGGCGGGAGCCTACAGAGCCACGTTCGAAGACAGGCTGCTGATGAGTGACATTGTGTTCCTGCGCTCCTGGTACCCGGTGTCAGTCCCTCAGCTCTACAACCCCGTGACCTCCCTGCTGATGCCAGCGGGCCAGAAGGACAGTTGGTCGGGCATGAGGACGGTGGGCCAGCTGAAACACGACCTGGGGGTCCGCAACAAGCCCAACACAGACTCACTGTACAAGCCGGTGGTGCGAGCGCAGCGCCACTTCAAGAAGCTGCACATCCCCCGGGAGCTGCAGAAGGCATTGCCCTTCAAGAGCAAGCCCAAACAGGACCAGCCCAAGGGTAAAATGCCTAAAGACCTCCAGAGGCCTGCTGTCATACGGGAGCCCCACGAGAGGAAGGTGGCGGCGCTGCTCAACGCGCTGAGCACGGTGCACAACTACAAGAGCAAGAAAGCGCACATGGCGCAGCACACTAAGCACAAGGACTTCCTGCGGCAGCGGAGCAAGGCAGAGGAGGACAAGCTCAAGAGGCAGAAAGAGGCGAAGAAGAAGCTTTACCGTATGATGGGCCAGAAGGAGAAGAAGAGTCAGAGGTCCAGTCTGAAAGGGGCGCCGCAGGATGACTGATTTTAAATCAATATGACTCTTAAAGACCAGTGTAATAACTTTTCGGCCTACCAATGGATTGGAATAACCCTGTTTAAGCATAATCTGTTGGGCTGCAGTGGAGTAGGGAGAAattgcccctagatgctgatctcgggtcagtttagcattttccccgCTAATGGTTAGTGATATTTTGGCAATTAAGCCTATTGTTTACTTCCCTAGTCAGAGAAACTCATTCATGGATACCATTTCTATGTCTCTGCATACAGTATGAAGGAAGGattggggaggggaagctgatcctagatcggtACCTAGGCGAGTCTTCACCCAGAGCGTCTTCAGTACTGGGGTAGGAGTGTAAATGCAAGGAATGGATGAACATCCTTCAGCTTCTGTAGCCTGGTTGTGTAATGTGGTTTTTCAACCCCAGTTATTGACACCTCATTTCAAGTGGTTCCATAGAGGAACCAGAAAGAACTGTATATTAGTCATATCTCTACCACTCGTCTAGCTTCAATCTTGTGTGGTGatttaataaaaataacaaaGATATTACAAAACTGTGAGTACCTTAACTCTAAAAGAGCATAGAAGTAAAGTAAGTGTAATTCTATAATCTATTTTGATCGAGTAGAAGTTTCATAATGGCTAGGTTGTTTCAAATGCACTGATAAGTGGAAGCACATGGCATTTCAGCAACTTTGAAGTTGTGCCTGTCAGAGCGAactcatcatggatataaccCATTTTAGCATGGACATTTTCATTGAGGACTACCACCATTTTAccaagtagtcaactgggtgggattcatccacaaatgaataaaaatgtactactttaaaatggagatggtcacaatggcgctgcccatgcagTCAGACGCTATACGGCCCCACATttgaggtgtcataataccctaGTGGTCTAACAGGGTAATGgtaattgtttttccaccattcatttttcccataaggaattttagaaacacttgTGTAGGCTTAACCTGGTCGGACGTTTTGATATCATGCAAGGtgatttatcaatatattcggctctatttactcattctaaaatgctaattagacatcatgcaagactaaaAATCCCTGCAAGAggctgcacgtcatctctagctgacatctttgctaacaggtattgtgtcaatttaaaacttgcacaagacagctCACAGAAGTGTCAATTGTGAAGACATGTATTCATTACTAAatgtagctaacattagatagttaatccagagattcttacttTTGCCACTGTTCGGCAGTCTCGTTCAGATCATCGTGGCATTTAGTTCTTTATGATGGCCACATTAGTGTTTAAATTCTAATATATTAATAAAAGCCACCTTGTCCTAGACTTGAGAGATTTACATGATTATCAAAATGTCACTCCAGGATAAACCTACATGAAACACGGCCGTTATTATTTTCTAAAACCCCTATGGGGGAAAATGAATGGTCGAAAagcgattggaaccatttccttgtttgaccgctaggttttatgggtatgaAGACTCAACCTGGGGTACTTTAAAGTCAGATACAAAAGAGTCCTCTGTCTCTATGGCCTGTTGTCACacatctgccctctcattggctacaaTCGTCCCACCTGATCTCGCTTCCTCCcacctgccttccatctttgagaACATGTATTATCATTGTTAGTGGTCACTCGAATATAGATTAAAACAGGCTAAGGAGATCTTATATGTTTTTGTTCTGAgatagtcagttaacatgaccatAATGAATGCCTTTTGTGCTTGTTGTGATTACATTGAATGCTTCAAAGTTCAAAAAGTGATGTTAGCTAATGAACATGATCTCATAGAATAAAACGTGTAAAATCGAAGCCTGTGTTTACGGCAGACTTTTTCACTGTttatctaaaaatatatatatatatatatacgctgctcaaaaaaataaagggaacactaaaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151846 lncRNA upstream 1013 31260432 ~ 31261041 (+) True mxtx2
TU151849 lncRNA upstream 5011 31255824 ~ 31257043 (+) False mxtx2
TU151863 lncRNA upstream 9585 31252258 ~ 31252469 (+) True G131815
TU151861 lncRNA upstream 12221 31249619 ~ 31249833 (+) True G131813
TU151836 lncRNA upstream 33476 31228173 ~ 31228578 (+) True G131794
TU151886 lncRNA downstream 1120 31295697 ~ 31295995 (+) True G131835
TU151898 lncRNA downstream 40705 31335282 ~ 31388272 (+) True G131847
TU151939 lncRNA downstream 100512 31395089 ~ 31395472 (+) True G131886
TU151952 lncRNA downstream 136741 31431318 ~ 31431552 (+) True G131899
TU151954 lncRNA downstream 140159 31434736 ~ 31434966 (+) True G131901
XM_036945721.1 mRNA upstream 924 31256517 ~ 31261130 (+) False mxtx2
XM_021558777.2 mRNA upstream 924 31258962 ~ 31261130 (+) False mxtx2
XM_036945724.1 mRNA upstream 924 31258964 ~ 31261130 (+) False mxtx2
XM_036945725.1 mRNA upstream 924 31258980 ~ 31261130 (+) False mxtx2
XM_021558792.2 mRNA upstream 924 31259078 ~ 31261130 (+) False mxtx2
XM_021558804.2 mRNA downstream 5425 31300002 ~ 31315913 (+) True LOC110486933
XM_021558857.2 mRNA downstream 65831 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA downstream 65831 31360408 ~ 31366322 (+) False eaf1
XM_036945732.1 mRNA downstream 294897 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 294902 31589479 ~ 31624014 (+) False LOC110486995
TU151514 other upstream 512100 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 561431 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1472223 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1568203 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1620958 29600026 ~ 29641096 (+) True G130308
TU151908 other downstream 65859 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 65859 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 563071 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 563109 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1872861 33167438 ~ 33169378 (+) True G133473

Expression Profile