RNA id: XM_021558804.2


Basic Information

Item Value
RNA id XM_021558804.2
length 3080
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110486933
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31300002 ~ 31315913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACTTATGTTGTTGTTATCGAGCAGAAAGTAGCTCGTCTACTTGCTAGCTgtatatcataatgttttacGGATATTGTCAAGGCGGTTGTTTCTATTTCATTAATTTGATAATCTTATTTTAAAAACCCAAATTTTGGAACTGTAACTCATTGCTTTGATTTAGCTGTCTGACGTTCTATCAAGTTCGGCTTGCTAGCTAACGCCGCTAGCTAGTTAAAGTTGGTTACGAATGACAGGGACAGTCATATTTTCCAGGCTGTATGAAGGCGTATGAAAAAACGTTAGAACAAAATGGATTGCACGGCACTGGAGCACGATGCAGTTAAATTTGCTAAAACTGCTGTCATCTGCGACCAGAATGGAAAATACAACGAAGCGGTCTTCTATTATAAGGAGGCGGCACAAGCCCTGATCTACGCCGGCATGGCAGGGTCTAAACTGGAGGGCATCCAGGATAAAGTCAATGAGTACCTGGACCGGGTTCAGGCCCTGCACAATGCTGTTCAAGCTCAAAGTAGCGACCCTCTGAAGAGCAAGCAGCAGGTGGATCTGGAGCGGGCCCACTTCCTGGTCACCCAGGCCTTTGAGGAGGATGAGAAGGGCAATGGGGGCGAGGCCATCGAGCTCTACACACAGGCCGTGGAACTCTGCATCCAGACGTCTCATGATACGACAGACCAGGGGCTGCAGGGCAAATTGAAGCAGCTGGCTCGTCAGGCCCTCGATAGGGCGGAGGGGCTGAAGGAGTCCCAGTCCGCCAGTCCCTTAGCCCAGTCGCCACAGGACAGGCCGGGGCCCTCAGGGGCCAAACCCAGTGGGGGGCCTTGTCCCGTCAGACAGTTCTTCCCCCTGGGGCCTGACTTCTCTCTCCAGGACCGCCCCCAGCCAGTCAGGCCGGTCCAGTCCAGCGAGCCTCAGGGTCAGCGCTACACCTCAGAAGAGATCGAGGTGCTCAGGAGCACGTCCAAGATCAACGGCATACCCTTCGTCCCCTTCATGAGTGTGGACCTGAAGGAGAGATTTGCCTTTCCTGTTCCATTCTCGGACAAACTAGGCAAGCTGGCCCTGTCTCCCAAGCAGAAAACCATCTTCTCCCGCTGGGTTCGCCCTGACGAGATCTGCAATAACCCCACCATGATCTTATCTGTATCCAGCTTCAGCATCAAACAGACAGTGGTGTCTGACTGCTCGTTCGTGGCGTCGTTAGCCATCAGCGCTGCCTATGAGCGACGCTACAACAAGAAGCTCATCACCAGCATCATCTACCCCCAGAACCGGCGCGGGGAGCCAGAGTATAACCCCTGTGGGAAGTACATGGTGAAGCTTCACATCAACGGTGTGCCCAGGAAGGTCATTATAGACGACTTCCTGCCATGTGGTCAGAATGGAGAGCTGCTGTGTTCCTACTCCAGCAACAGGAACGAGCTGTGGGTCTCCCTCATAGAGAAGGCCTACATGAAGGTCATGGGAGGTTACGACTTCCCCGGCTCCAACTCGAACATCGATCTGCACGCACTCACTGGCTGGATCCCAGAGCGTATCGCCATGCATTCAGACAATCAGTCATTCATCAAGGACGACACCTTCCGCATGCTCTACCAGAGGTTTCACCGGGGCGACGTCCTAATCACCACAGCAACAGGGGTGATGACAGAGGAGGAAGGCGAAAGGTGGGGCCTTGTGCCAACGCATGCCTATGCTGTCCTGGATATCCGGGAGCACAAAGGGAAGCGATTCCTACAGCTGAAGAACCCGTGGAGCCACCTGAGGTGGAAAGGCCGCTTCAGTGAACGGGATGAGAAAAATTGGACCCCAGAACTTCTCAAATACCTCAACTTTGACCCCAAGACCGCACAGAAGTTTGATAACGGCGTGTTCTGGATCACGTTTGAGGACCTGTGCCAGTACTATGATGTCATCTACCTGAGCTGGAGCCCCGCCCTGTTTAGAGAGTCTTCCTGTATCCACAGTAGCTGGGATGGGAGGCAGGGCCCTGTGAAGGATGCCTACAGCCTGGCCAACAACCCTCAGTACCGGCTGGAGGTGACCTGTCCTGCAGGGGGCACTGCTGTCTGGGTGCTGCTGACCAGACACATCACTGACAAGGATGACTTTGCACAAAACAAGGAGTTCATCACCTTGGTGGTTTACAAGACGGAGGGAAAGAAAGTTTACTACCCTGCGGACCCTCCCCCCTACATAGATGGGATCAGGATCAACAGCCCCCACTACCTGACCAAGATGAGACTAACCagcactggaacacacacattcacactggtGGTGTCACAGTACGAGAAGCAGAACACCATCAACTACACCCTgaggGTCTACTCTGGATGCAAGTTCTCCTTCTCCAAGATCCCAACGCCCTTCACTCATACCAAACGGATCAATGGCCATTGGAAGGGGCCGAGTGCGGGGGGCTGTGGGAACTACAAGGACTCGTACAAGCACAACCCAATCTACCAGTTTAACCTGGAGCGCCCAGGACCCATGCTCATAGAGCTACGAGGCTCCAGGCAGTACAGTGTGGGCTTTGAGATGGTGACCGTGTCCACTGTAGTAGAGCCAGGACCTGCAGGCCACCCGAAGAAGAACAGTGGAGACTACAGGTGTGGTTTCTGCTACATGGAGGCAGACCATGTCCCTGCTGGAATCTACAATGTCATCCCCACCACCTTCCTGCCCAAACAGGAAGGACCCTTCTTCCTGGACTTCAGCAGCGCCACGCCCCTAAAGGTCTCCCAGCTCCAgtaaggagaggggggaggattcAGGGGTGACACCAGGAATAACTTGCTCAGAACATGGACACACTCACTGTTCCCTAGACTCTGGGTGGAACTTGTTATGATTGCAGGACGACCCCAAAGAGACTGATTACTTTATTGATTATTATCAAGGGTATTTGGAAAGGGACATGTTTTTGGTATGGAACATAGCCCTCTATGTGCTGAGGTGTGCAAGAACATGTTCCAAAAAATGTTAACTGACTGAGTAGTAACTATCAGAGCTAATGTTGAAGGTGCTTTCATCCTCCTTTGCCATAATGACAGATACAGTAAATGATGTCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K08576 CAPN7; calpain-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151886 lncRNA upstream 4007 31295697 ~ 31295995 (+) True G131835
TU151870 lncRNA upstream 5776 31293678 ~ 31294226 (+) True LOC110534710
TU151846 lncRNA upstream 38961 31260432 ~ 31261041 (+) True mxtx2
TU151849 lncRNA upstream 42959 31255824 ~ 31257043 (+) False mxtx2
TU151863 lncRNA upstream 47533 31252258 ~ 31252469 (+) True G131815
TU151898 lncRNA downstream 19369 31335282 ~ 31388272 (+) True G131847
TU151939 lncRNA downstream 79176 31395089 ~ 31395472 (+) True G131886
TU151952 lncRNA downstream 115405 31431318 ~ 31431552 (+) True G131899
TU151954 lncRNA downstream 118823 31434736 ~ 31434966 (+) True G131901
TU151956 lncRNA downstream 123484 31439397 ~ 31439623 (+) True G131903
XM_036945726.1 mRNA upstream 5425 31262054 ~ 31294577 (+) False LOC110534710
XM_036945721.1 mRNA upstream 38872 31256517 ~ 31261130 (+) False mxtx2
XM_021558857.2 mRNA downstream 44495 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA downstream 44495 31360408 ~ 31366322 (+) False eaf1
XM_036945732.1 mRNA downstream 273561 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 273566 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA downstream 279919 31595832 ~ 31624014 (+) True LOC110486995
TU151868 other upstream 6968 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 550048 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 599379 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1510171 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1606151 29685967 ~ 29693851 (+) True LOC110486279
TU151908 other downstream 44523 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 44523 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 541735 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 541773 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1851525 33167438 ~ 33169378 (+) True G133473

Expression Profile