RNA id: XM_021558814.2


Basic Information

Item Value
RNA id XM_021558814.2
length 4223
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110486940
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31317605 ~ 31352632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTGTTATAAAACGCTAAATCAATATAACATAAGGTTTTGATTATATAGGCCATTTCCCATATTGATATGACTTGGGGTGAGTATTTATCTACAACGGACGTGCATGATACCATATGAATATAATTCTAGATCTATGAATGCTACATCATCAGATTGTTCTTGAACTCTTATTTCTTTGAATCCAGACCTAACAGACCAACATAGCATGTTTAATCTATAAGACATCCCCCCCATTCATTTACTGTATCATGCATTGCTTATGGTGTTACGCTGCTCAGCACTGGGCTACTTATGTTATGAGTACACAGTATATGGTATCTGAGAATTGGAAAAGGTGAATCTAGAATAGAGAGTATGTGGTATTTTGGAGATGACTAATACAAAGAGGGTATCTGGTCGGGTATGGCTAACTGGCATTTGTGGAATGCAGGGGAACTGAATATCTGAGGGTATTCATTAAATACCAATACCATTCATTATTATCTGAAATCTGGAACATTTTATTGTGGgaataaatatattattattgGCATTTATAAAAAAGGTATTGAGCTTCCCAAATGGTATATTCAGCTTGTTATAACTGTTTTACCACATAGTAAGTAGTCTGATGGTACATACATCTATAAATGCATCGGTTTGGACAGCAGAAGGGGCGTAACGTTACGCTGTAGATACTCGTACACAAGTCATTTCATCATCACTTGCTCAGTGTATTGGACGCAGACAGAGCGCTGCTCAGTCAATTGACATACATGACGATTATCACTCTTTTGTCTTTCAATTACCTGTATATCGCCTTGATTATACATATTTCAAAAATCGTTTTTATCATTGCCAACGTTGCAGTGTGATTGAAAGTGTTCTGGAAATTCCTGTGTCGCTGTTAGAGCGTTTCTTGGAAATTGGCTTTGTTCGCTCCGACAGCACACAGCTTTATCATCCAGAATGGACCATTTGGAGAAGGAAAATAGGTCTGACGAAGATTCGGAATACGAAGAAGAGGAGGTGGACCCTAGAATTCAGGGAGAACTGGAGAAACTCAACCAGTCTACAGACGACATCAATAGATGTGAGACACAACTGGAGGATGCCAGGCAGAAGTTCCGCACAGTGCTGGTTGAGGCCACGGTGAAGCTGGATGAGCTGGTCAAGAAGATTGGGAAGGCGGTGGAGGAGTCCAAACCCTACTGGGAGGCCcggagagtggccagacagGCTCAGCTGGAGGCCCAGAGAGCCACCCAGGACTTCCAGAGGGCCACGGAGGTTCTGCGTGCGGCCAAGGAGACCATCGCCCTGGCAGAGCAGAGGCTCCTGGAGGAGGACACCAGGCAGTTTGACTCAGCCTGGCAGGAGATGCTCAACCATGCCACCCAGAGGGTGATGGAGGCGGAGCATACAAAGACGCGGAGTGAGCTGGTGCACAAGGAGACGGCAGCCAAGTACACGGCAGCCATGGGCCGCATGAAACAGCTGGAGAAGAAACTCAAACGCACCATCAACAAGTCCAAACCTTACTTTGAGTTGAAGGCAAAGTACTACCTACAGCTTGAGCACCTAAAGAAGAATGTGGATGAGTTGCAGGCCAAGCTGAGCCAGGCCAAAGAAGGGTACAAGACAGCTCTGAGAAACCTCGAGATGATCTCAGACGAGATCCACGAACGCCGACGCAACTCAGCCATGGGCCCCCGGGGGCGGGGCGTGGGCGCCGATGGCGACAGTGTCGCCGTGGATGACATTGCCAGCTTCAAGATGGAGTCGGATGGCATCTCCATGACGTCCAAGTCGTTTGAGGATGAGACCTGCAGCAGTGCCATGTCAGAGGAGGACTCAGAGACCCGCTCCACCTGCAGCCTGgtctcctcctcccactccccaAACAGCCCCCAGGACCTGCCCTCGCCctgcccctcctcttcccctgctCCCTCCTCACGCCCCTGCAGTCTGGACCTTCCCAGCCCAGTCTCGCTGTCTGACTTTGGCCTTATCTCGCCGGTCCTGGGACCACGCAGCGAGTGTAGCGGGGCGTCATCACCTGAGTGTGAcctggagagaggtgacCGAGCAGAGGGAGCGGAGGGTGAGCTGGACAATACTGTAAACAACAACAGCACCACCGTCCCAAACACCAACAAGACCACGGGCCTGGAGGTCCGCCTCAGCTTCCTGTCTCTTCGATGCTCGCGCAACGTCAGCTCCAAGAACACTAAGCGCGAACGTCAAAGCCGTTCCCAGACCCCCACCCAAACTGTGGTCCTGATCAACGGGGTGTGAAGAGGAAAGCTAATCCACAAGCTAACCCCATCACTGGCTTTGTGTGCCAACATGCTGTATTACcagtaaccacacacacacacattccatacTACCCCATGAACTAATGAACTAATACTGGCTAAGTGAATAAAAAGTGGCTCAATATGAGACACTATGAACTAAAtggtcagtgtatatacagtTCCTATGGATCATGATGATGAAGAGACTTAAGACCAAACCCAGGGTTGGTGATGTCATGAAACCACCACTTCCTATAGAAAGGACCTTTCAACTTTTGACATCCCACCCATAGCTTCCTCAGTCAGATTGGCTTCCCATAATTCCCTACTGAACTCCACACACATTAAGGACCGTGCTGGCTAACGCCCTATGGATGGGGGCCCATGGTATATGAGGGGAAATGGGATAAACAGTGTTATTTTTACTGTGATATTCTCCCTGAGAGGGAGCTGCACTTCCAGACAAGATGTGATTCTGTTGTTCGTAAATGAAAGAATGCACTCCTAGCTTCGACTATTAGAAATGGGGATTATTTATAAAACTTGATGCCACCTGTTTTACCAatacagaaaatagtaaaatacacAACATTGACAGCAATCTGTGTTATGCTTTTGTAAACGAAGAGCATGCATCAGGCCAGGATTTAAAGTCAGGATTTATAAAAAGAAACAAGTACATTTACGGAGTTCAAGTTTTGTGAATAACCCTCATGACTTGTAATATTACTCTGCTATATCGTCTCACAGATAGTTGATTTTTGAATACTCTCACCATTATGTAATCCTGTGTACGGCATAGAGCCTATGGCAACTGCTTCATGTTACCATGGAGACCAAACACACACTACCAGCCCCTGGCTGGCATCTCTTCGGACAGCCCGTGCATTTGTTCAATAGGGGTCTTCAGAATTGGACTTAAAAGAACTGTATTCTATTGCTCAACTCACTTCCCAGTGATCTGCGAATCCATCTCGCCGACAGTACACATAAAACTGGACTTGGAATCGATTCCAAGAGTAGAATAATTGTGTGGGGTGAGGCTACAGTAGAtataccctcccctcctctcttcctcctggcTCCCTCCATCCTGTGGTTCATCGGCACCACACTGATGTGGTGCCAGGGAAATGGGCCCCCAGACACTGTCAACCATCTAGttctccttccatccatctccctGTCATGGCATCCCCAATGGCCGCGTACTGAGGGACAACGTCCACCCACGGACGGTAACACTAAAGAACTGAGCAATAGCGCAAGGACAGAACTTTAGATAACAACATCTGCCCATGGACACTATCACATAGAGTTCCCTGTAACGGAATGAAAATGGCCAGCCAGGTAATTCTCAGAATCTGAGGATGGTTTTTGTCTTGGACCAATATTGAGGAGAAAGTGAAACTGGATGACAATGAAACTGATGATGGTGAAGAATGACGAGGTCTTTTGTGGAAACTGACAGAATAGTTGATAGTGTTGGTTTCTGGTGGACAGTATCAGCTCCTGTAAGTTGTAGATCCATATTGGCTAAAGTGGCACACAGTAGACTGTCAGATGTTAGAGGTCTCGTCGTCTGTCTCAAATAGTGTTCAATTGGCTTCCTCTCCTGGTCTCCTTATGCTCCATGGCCACATGGGAAAGGTATTTGGTCACTGAGTTATGAGAAAAGCAAGCTATTGCACAAGCGTATGCAGTCTATTTGTTATTGTGAACGCTCCAGTCTATGTATGTAGTGTACGTGtacaaatgtaatgtaatgtatcgaTGTTTCTGTCACCCTCCGCTGTGGAATATAAGGATATGACCATGAACAGTCCCTGTCATAGCCGTTTTCTTCCATTATGTTAGAGTAACTTTCCATTGTGTCTTCACAGTTTAATGTGCCTGTTTTCTGAAAATAATCCATTAAAAGGGTTGTTCACTGCA

Function

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152220 lncRNA downstream 20295 31297028 ~ 31297310 (-) True G132118
TU152219 lncRNA downstream 21655 31295588 ~ 31295950 (-) True G132117
TU152196 lncRNA downstream 41653 31272373 ~ 31275952 (-) True G132095
TU152191 lncRNA downstream 48225 31269175 ~ 31269380 (-) True G132090
TU152129 lncRNA downstream 59486 31255914 ~ 31258119 (-) True G132053
TU152257 lncRNA upstream 42362 31394994 ~ 31395214 (-) True G132153
TU152279 lncRNA upstream 78566 31431198 ~ 31431553 (-) True G132174
TU152285 lncRNA upstream 85729 31438361 ~ 31438655 (-) True G132180
TU152286 lncRNA upstream 86552 31439184 ~ 31439452 (-) True G132181
TU152289 lncRNA upstream 117749 31470381 ~ 31470622 (-) True G132184
XM_021558825.2 mRNA downstream 17629 31298133 ~ 31299976 (-) True pkdc
XM_036945727.1 mRNA downstream 17758 31298133 ~ 31299847 (-) False pkdc
XM_021558762.2 mRNA downstream 68732 31231353 ~ 31248873 (-) False herpud2
XM_021558766.2 mRNA downstream 68732 31231353 ~ 31248873 (-) True herpud2
XM_036945709.1 mRNA downstream 69860 31231353 ~ 31247745 (-) False herpud2
XM_021558844.2 mRNA upstream 5202 31357834 ~ 31360219 (-) True LOC110486970
XM_021558832.2 mRNA upstream 13697 31366329 ~ 31388549 (-) True LOC110486958
LOC118936732 mRNA upstream 122262 31474894 ~ 31567154 (-) False LOC118936732
XR_005036376.1 mRNA upstream 216589 31569221 ~ 31576243 (-) False LOC118939115
trnap-agg-2 mRNA upstream 224156 31576788 ~ 31576859 (-) True trnap-agg-2
TU152092 other downstream 118793 31197073 ~ 31198812 (-) True LOC110486868
TU152142 other downstream 121313 31192466 ~ 31196292 (-) False LOC110486852
TU152311 other upstream 183415 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 282688 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1386197 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1386197 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1395576 32748208 ~ 32788121 (-) True G134102

Expression Profile