RNA id: XM_021558857.2


Basic Information

Item Value
RNA id XM_021558857.2
length 4851
RNA type mRNA
GC content 0.38
exon number 6
gene id eaf1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31360408 ~ 31366322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACTGGAACAAAACAGGAAAAGGAGTGGTCATGTGACGTATGGATTGTTTCGCGAAAAATCTTAGCTAGCTGCACAGCTAGCTAAAGTATCTAATCATCATTACATTTTTTAACGCAGCATAATTTACATAAATGTGAATATTAAACTTCCAGCAGAGTCATGAATGGGAGTACAAATCCGCTCTTGGACAAAGAAGAACATGTTTTGAAGCTCGGAGAGAGCTTTGAGAAGAGGCCAAAATCGTCATTTCACACCATCAGATATGATTTCAAAccagcttcaattgacacaagctGCGAAGGAGAGTTGCAAGTCGGTAAAGGAGAGGAAGTCACCATCACATTACCTCACATTCCAGGCTCTACACCACCCATGACAGTATTCAAAGGGAATAAGCGGCCATATCAGAAAGACTGTGTTCTTATCATCAATCATGACACTGGGGAGTACATGCTGGAGAAGTTGAGCAGCAGTATCCAGGTCAAGAAAACCAGAGCGGAGGGCAGCAGTAAGATCCAGGCCAGGATTGAGCAGCAGTCGGTGCGTGCCACTGCCACCCAGCCTCCAGCGCAGTTCCGTGCCCCCACTAAGCCTGGTGCAGGCGCCAAgacctccccctccccttccaaGGACAACCCCTCCCCTGAGCCCCAACTAGATGACATCAAGAGAGAGCTGCGAGCGGAGGTGGAGGTTATTGAACAAATGAGCAGCAGTAGCGGCAGCAGCTCATCTGACTCTGCCAGTGGCTCTGGTAGTGGGGACGACAGCTCCAGCAGTGATGGGGAGCATGACGCCCCTCACCCCCAACctatcccactccctctcccccacatCCAGCCCTCCCCCAACCGTAATCCCATGGCCAACGGAGGAGCAGACAGGCAACAGGGCAGCAACCAGCTGATGAACACGCTCAGGAACGACCTCCAGTTGAGTGAGTCAGGCAGCGACAGTGACGACGACTGAACTGCCCCCATCTACCTCTCATTATCACACCATCTtgctctcctctttcttctctttgCCTGGTTCCGTTGTTTTGCTGCTGTGGCAACCGACCCAACTGTAAAGTCtagttttattgttttttttttatatctctTGAGAAACTGGCCAACCTTAAGATTTAATAGTGTATTTTTTGATTAGCTgtatattttgttttgtatttttaaatcCTTTTACATATGAAAACATGCTAAAGAATATATATTAGaatgcatatatatattttttctgtaGTTAGAGCTCCTAGTTGTATCAACTTGTATCACAAGTCTTTGTTGTTTTCTTGTTTCATCACAAGGGGAGGGGCTTATTTGGACTATATCACCCCCATCTTCCCTATTTATCTGGAAATCAAAAGAAGGCACTGAAAGCATTTCACCCATTCCATGTTTTTATCAGTATCATGACACTTTCAAAATCAGTCTTTTAAGAGGCCAGGATGCAGCTCACATCAATCTTAAGCTATAGAGGATACTAAAGGACATACTCATATTTTTCTTGTAAAATCAGTTTCAATTGACCACTTACTAAAGTGTTTAGCTGGAATATTGACCTGTTCTGGTGAACATTTCATCATACCCTTTATAGTTAATATTCTACTATTTCCACATCTATTATTTGACTTTCTTATTCTGTCTCACTCAATAGCTAGATtaccatccaattggtgacagattttcatgcgaacattctaaaatctgcattaaAACAATATGTGCATATTCCCACCAGATATGTTTCCATCAAATCGATTTGTTGCGGAtaacagtatgtgtgtgatgacgtagtgcacataaataCAAGTttaatgggtttccatcgcattttaaACTACTAATGTTGCGTTATATTGCGAATCTCTGGTCTgcacgtgcgctctagccaacagctcgcaggtaggctagtctacatgatgagattattatggataaagCGTGATTATCTTTTATTTGTCAAGCGGCAGCctagcatcgatcatcatgtcaccagaataagaccctcgatatttattggaaaggctcatcaccgtgcactttcaccaccatgTAAAGTTTATCATAATTTATTTCATAtcgcctaataaactgcatgcttgtcgtagtgggaggaccacacaatatCATCACATGACTCCAAATTGATTTCGATATGAtatttatatcaatatttgcacatgaaggcgtttccactgccatttctcgCATTAGTAATTCTACAGACACACTGTCTACTGTGTTTTGTCGaaatttggaaagtttaccgataaaaatgtgttttttccaCCAGTCCTGTCGTGGCATTgttttatccgacatgtactttactcgcgtgaaaaggttggatggaaacctggttactggcccaaccatATATCACTGTCCCAAATTCCCAACCGTATAGCACTGTCCCAAATTCCCAACCGTATATCACTGGCCTAGTTTCAGACCAGTGTAGACATTGAAGCCAAAGAAGCAAAACAAGTAGTTTTTAGAATACAGACACCGAACTTCTATTTTTACTTAGAAATGCGTCTATTTTCACTAGATGTTGAGTTATTCATAACATGTAAACGCTGATATAAAATGACCACTTGTTTTTTTCATCAGTTCCAAAGATTCAACTGATTTGGAGTGATAGCAGTCACGTTGGATCACATATTTTAATTTAGCAACTGTTGTGACAGAGAATATCATTTGATACTCTATATCATGTGCCCTGTAACAAAACAATCCCTAATCCAAAATATCTTGATGTATCCCCCATAGAGATGTGACGTTGTGGCTGTATCCCAGTGGGCACTCCACGTAATTTAAACGTGGAAATGtaggtaatatttggttgagacgttgatcaatgaaatttcaacctttattcacccactcaaaaagttAGCCAGAAGTTTGTTGAATTTCCGGTGTGTTATCACTATGCATTCAACCATCCAAATGCACAATCAAATTCCAATTTGAAAAACGGTGATTTCTAGTGTAGTTATAATCTAAATGTTATCACTGCGCTTTCAACCATTTTAAACCGCAAGGTTCAAATGGGAATAAAACGTCAGATAATTTGTATTTATACAACAATTTAATAGCAcgaccaaatgacctggattgcagctgTACAAAGTGATCAATAAGGTTCGAGATTCTGCGCAGATTATTATAGGTATTGtaaagatctccacagacctgcggtGTTTGAACATGCACGCTTTCAATTATTACAGAAGACATTTATAGTTACTGTAGGCTAACCTGAAAATGTGACCATGGATGTGTGTTACTAATTTTAAGAtggaataaatactgttacattagtttgtaaaatagccttaactttaggctatttactgtattccAAAAGTCagccaaatatcaacattttaaaGGATATCTAATGCTTGGATGGTTTCATCCTAttttttaacttttatttttggttaaattggagacgtgaatccaacatatcatttGTTAACTTGTCGTCAAGTTAATATgctatttactgtattgcaaaagtgatattgaattgtgtttggttgtcaacacacctccttcaaatgttgatatttggttgtatCTTTTTTGCCCTGATTTAGTATAGCTTTAATTCCAATTTGTCTACAAATTAACAATTTATATGTTGAATTATTGTCGCCATCTCAACCAAGAATCAAAATGAAAGAAtgtgactaaatcaaatcaaagtttaagTGCATTTAAAGTCAGAtgtgatttagtcctattctttaacttagattgttggttgagatggagacatgaatccaacatatcaataattcatttgtagacaaactggaattaaagccagactaagtcagtggcacagatggaactatccaatcaGAAGAtaaatctccttcaaatgttgatatttggttgcattgacaaCTAAATACTATTCAatatccagtttgtctacaaattttATAATTGAAATGTTGGATTTGCGTCTCCATCTctaccaaaaatctaagttaaagaatagtaCTAAATCTAGTCAAACTTTAAATGCAATTTACATAAACTTTGATGTAGTCCTATTCATTCACTTAGTCCTAGTCtggtcagtgacaaatatcaaagctaagcagggctgggcttggttaaaaccctggatgggaaaCCAAATTAATAGCTGAATATAGATCAACTCTCCAACAGAAGGTGCTGCTGAACCTATTGTTatttttctgatagtggatatgTCGTTGAAGATCTAAtgttgtttcaaaggtacaaattcaacatattttatacaaggtttgtctatgttgaaaattggttacaaCGATGACATAATCCCGTGGTTGAAATTCCACCCTCAAAATAAATTGACATTGATAACTTTTTTTAAATCCAATATATTTTCCACATAGATTCCATGTCACAAAACATTGACAAatttacgttgaaccaacgttgattcaaccggtTTATGCCCAGTGGGATGTGTGTTCATAAGGTGCTTACATGGTATTTAACTGGTGCTGTTTTGTGTCTGGGAAATCAAGCAAGTGATGTGTATACAAATTTAATATAACGTTTTGTTTTCAGAGCAGTTTGGATCCATGTAGTTGGATGCTATTTCCAATTTGTGTCTCTCTGGCCTCCAGTGTTATTTCTGACCCATACTGTTACTGTCCCAGTACAACCTCTCTTGCCACATTTATCGAGGTGGTTGACTTATTGCGTTTTTCTCTAGGTTTTGTGCTTTGAGGTGTATTAAAGTGTGCACATGTATTTAAATTGAATTAACTTTTTATGTGTTGACCTCACATCAGTCAACCAAAATAAAGGAAGAAAACAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151886 lncRNA upstream 64413 31295697 ~ 31295995 (+) True G131835
TU151870 lncRNA upstream 66182 31293678 ~ 31294226 (+) True LOC110534710
TU151846 lncRNA upstream 99367 31260432 ~ 31261041 (+) True mxtx2
TU151849 lncRNA upstream 103365 31255824 ~ 31257043 (+) False mxtx2
TU151863 lncRNA upstream 107939 31252258 ~ 31252469 (+) True G131815
TU151939 lncRNA downstream 28767 31395089 ~ 31395472 (+) True G131886
TU151952 lncRNA downstream 64996 31431318 ~ 31431552 (+) True G131899
TU151954 lncRNA downstream 68414 31434736 ~ 31434966 (+) True G131901
TU151956 lncRNA downstream 73075 31439397 ~ 31439623 (+) True G131903
TU151962 lncRNA downstream 95365 31461687 ~ 31461888 (+) True G131909
XM_021558804.2 mRNA upstream 44495 31300002 ~ 31315913 (+) True LOC110486933
XM_036945726.1 mRNA upstream 65831 31262054 ~ 31294577 (+) False LOC110534710
XM_021558777.2 mRNA upstream 99278 31258962 ~ 31261130 (+) False mxtx2
XM_036945732.1 mRNA downstream 223152 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 223157 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA downstream 229510 31595832 ~ 31624014 (+) True LOC110486995
XM_036945737.1 mRNA downstream 475416 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 475417 31841739 ~ 31857595 (+) True LOC110534719
TU151868 other upstream 67374 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 610454 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 659785 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1570577 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1666557 29685967 ~ 29693851 (+) True LOC110486279
TU152486 other downstream 491326 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 491364 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1801116 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 2130132 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2447711 33814033 ~ 33814483 (+) True G133760

Expression Profile