RNA id: TU151908


Basic Information

Item Value
RNA id TU151908
length 1700
RNA type TUCP
GC content 0.47
exon number 6
gene id eaf1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31360408 ~ 31366322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCATGTGACGTATGGATTGTTTCGCGAAAAATCTTAGCTAGCTGCACAGCTAGCTAAAGTATCTAATCATCATTACATTTTTTAACGCAGCATAATTTACATAAATGTGAATATTAAACTTCCAGCAGAGTCATGAATGGGAGTACAAATCCGCTCTTGGACAAAGAAGAACATGTTTTGAAGCTCGGAGAGAGCTTTGAGAAGAGGCCAAAATCGTCATTTCACACCATCAGATATGATTTCAAAccagcttcaattgacacaagctGCGAAGGAGAGTTGCAAGTCGGTAAAGGAGAGGAAGTCACCATCACATTACCTCACATTCCAGGCTCTACACCACCCATGACAGTATTCAAAGGGAATAAGCGGCCATATCAGAAAGACTGTGTTCTTATCATCAATCATGACACTGGGGAGTACATGCTGGAGAAGTTGAGCAGCAGTATCCAGAGCGGAGGGCAGCAGTAAGATCCAGGCCAGGATTGAGCAGCAGTCGGTGCGTGCCACTGCCACCCAGCCTCCAGCGCAGTTCCGTGCCCCCACTAAGCCTGGTGCAGGCGCCAAgacctccccctccccttccaaGGACAACCCCTCCCCTGAGCCCCAACTAGATGACATCAAGAGAGAGCTGCGAGCGGAGGTGGAGGTTATTGAACAAATGAGCAGCAGTAGCGGCAGCAGCTCATCTGACTCTGCCAGTGGCTCTGGTAGTGGGGACGACAGCTCCAGCAGTGATGGGGAGCATGACGCCCCTCACCCCCAACctatcccactccctctcccccacatCCAGCCCTCCCCCAACCGTAATCCCATGGCCAACGGAGGAGCAGACAGGCAACAGGGCAGCAACCAGCTGATGAACACGCTCAGGAACGACCTCCAGTTGAGTGAGTCAGGCAGCGACAGTGACGACGACTGAACTGCCCCCATCTACCTCTCATTATCACACCATCTtgctctcctctttcttctctttgCCTGGTTCCGTTGTTTTGCTGCTGTGGCAACCGACCCAACTGTAAAGTCtagttttattgttttttttttatatctctTGAGAAACTGGCCAACCTTAAGATTTAATAGTGTATTTTTTGATTAGCTgtatattttgttttgtatttttaaatcCTTTTACATATGAAAACATGCTAAAGAATATATATTAGaatgcatatatatattttttctgtaGTTAGAGCTCCTAGTTGTATCAACTTGTATCACAAGTCTTTGTTGTTTTCTTGTTTCATCACAAGGGGAGGGGCTTATTTGGACTATATCACCCCCATCTTCCCTATTTATCTGGAAATCAAAAGAAGGCACTGAAAGCATTTCACCCATTCCATGTTTTTATCAGTATCATGACACTTTCAAAATCAGTCTTTTAAGAGGCCAGGATGCAGCTCACATCAATCTTAAGCTATAGAGGATACTAAAGGACATACTCATATTTTTCTTGTAAAATCAGTTTCAATTGACCACTTACTAAAGTGTTTAGCTGGAATATTGACCTGTTCTGGTGAACATTTCATCATACCCTTTATAGTTAATATTCTACTATTTCCACATCTATTATTTGACTTTCTTATTCTGTCTCACTCAATAGCTAGATtaccatccaattggtgacagattttcatgcgaacattctaaaatctgcattaaAACAATATGTGCATATTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151886 lncRNA upstream 64441 31295697 ~ 31295995 (+) True G131835
TU151870 lncRNA upstream 66210 31293678 ~ 31294226 (+) True LOC110534710
TU151846 lncRNA upstream 99395 31260432 ~ 31261041 (+) True mxtx2
TU151849 lncRNA upstream 103393 31255824 ~ 31257043 (+) False mxtx2
TU151863 lncRNA upstream 107967 31252258 ~ 31252469 (+) True G131815
TU151939 lncRNA downstream 31876 31395089 ~ 31395472 (+) True G131886
TU151952 lncRNA downstream 68105 31431318 ~ 31431552 (+) True G131899
TU151954 lncRNA downstream 71523 31434736 ~ 31434966 (+) True G131901
TU151956 lncRNA downstream 76184 31439397 ~ 31439623 (+) True G131903
TU151962 lncRNA downstream 98474 31461687 ~ 31461888 (+) True G131909
XM_021558804.2 mRNA upstream 44523 31300002 ~ 31315913 (+) True LOC110486933
XM_036945726.1 mRNA upstream 65859 31262054 ~ 31294577 (+) False LOC110534710
XM_036945721.1 mRNA upstream 99306 31256517 ~ 31261130 (+) False mxtx2
XM_036945732.1 mRNA downstream 226261 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 226266 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA downstream 232619 31595832 ~ 31624014 (+) True LOC110486995
XM_036945737.1 mRNA downstream 478525 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 478526 31841739 ~ 31857595 (+) True LOC110534719
TU151868 other upstream 67402 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 610482 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 659813 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1570605 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1666585 29685967 ~ 29693851 (+) True LOC110486279
TU152486 other downstream 494435 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 494473 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1804225 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 2133241 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2450820 33814033 ~ 33814483 (+) True G133760

Expression Profile