RNA id: LOC118936732


Basic Information

Item Value
RNA id LOC118936732
length 2467
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC118936732
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31474894 ~ 31567154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCCAGGGAAGAGACTGACGGTGAGAAgagaagtttgtgtgtgtgtaaccctgtgtgtgtgtttccccccCAGGCTGACTGGACCCTGGTCCCGGGGGAGCAGGCCTTGGACCTCAAGTGTCCCCTCCTCTCCGTCCTCGTCCTCCATCTTTGTTTGCGGCGAGAGGAATCTATACTTTCTCAAAGACAACAGACATATCCTCTTCATGAAGAAACTGGAGTACAACACCAGCTGCTTCCTCCCCTACTCCACAGTGTCTGAAGGCACCACCAACACTCTGGTCGGTAACCATAACAACATGCTGCTGGTGTACCAGGATGTGACGTTGAAGTGGGCCGCCCAGCTCTCCTGTTCCCCCGTGGCTGTCAGGCTCGCTAACTTCCCGGACCTGAAGGGTGTGGTGGTGACCCTGAGCAATGATGGCCACCTGCAGTGTTCCTACATGGGCACAGacccctccttcttcttcacgcCCAAGGTGGATGACACTGAGAGAACGAGTCTGCAGAGCGTCATCAGACAGACCACTAGGACCCAGGCTGATATTCTTCCTGTAGCAGCGACAGATGAGGATCTGACTGTTATAGCCACAGTCTCCACTAACATGGACAGCACATCGATGAacacatatccacacacacaaaATCAAGCCTACAGTaagctagactactacagtaAGCTAGAGTACTACAGTAAGCGAGAGTACTACAGTAAGCTTGACTACTACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTaagctagactactacagtaAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCGAGACTACTACAGTAAGCGAGACTACTACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGACTACAACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACATTGCATCCACCTACAGTaagctagactactacagtaAGCTAGAGTACTACAGTAAGCTGGAGTACTACAGTAAGCTGGAGTACTACAGTaagctagactactacagtaAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAACTAGAGTACTACAGTAAACTAGAGTACTACAGTAAGCGAGACTACTACAGTaaactagactactacagtaagCTAATCTACAACAGTaagctagactactacagtaAGCTAGAGTACTACAGTAAGCTAGACTGCTACAGTAAGCTAGACTGCTACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAGCTAGAGTACTACAGTAAACTAGAGTACTACAGTAAGCTAGACTACAACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACAGTAAGCTAGACTGCTACAGTAAGCTAGAGTACTACAGTaagctagactactacagtaAGCTAGAGTACTACAGTAAGCTAGACTACAACAGTAAGCTAGAGTACTACATTGCATCCAGCATCCCGAGGGTGGCCCAGTGTAAGTTCTCCCTGCCCCTCCGTCTAGTCTGCTGCCCCTCTGCCCCCTCCAAGAACGGCAAGTACAAGATCACCGTGGATACCAACAAACCGCCCGTCTACCTCAGCGAGGTCTTCCCAGGGATAGTGGGAGAGTGGTGTTCTAGCGGGCGGTCCAGAGCCACCCAACGCCGTCTCCTGACCCGCTTCAAAGACAAGACCCCCGCCCCCCTAAAGAACCTAGACACTCTGATGGAGGGCACCTACCgccagGTGATAGCGTTGGCAGATGTAGCGGAGGAGAACCGGGCATGTCTGAATAAGGCGTTTGTCCGCCTGTGCAGCGCCACCCACCTCCTCATCATCCTGGTCTCCCTGTGGCAGGGTCTCAACCCAGAGCAAAACGCCATCCTGGAGGCTACGCTGCTACCCCTGGTACAGGACACACCAcagctgGGTTGGGAGGAGAGTGTGGACACGGCCTTGTCTCACCTCCTAAGGACCTGTCTGTCTCGCAGCCCTAAGGATCAGGACCTGTCTTCAGCATGCCCAAAAGGCACGGTCTGCCTGAAGAAGCACATCACCCTGCTGTGTGACCGCCTGGGCTAGGGGGGGCAGCTGTCCCTGGCCTCCGAGGCCAACGTACCCATACCAGTCATGATGCCagGGGGCTGTGAGCCAATCGCGGAGGCTGTTGCGGACCTGGAGGAGCCGCCCCTGCAACAGGAGTCTGCCACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152289 lncRNA downstream 4272 31470381 ~ 31470622 (-) True G132184
TU152286 lncRNA downstream 35442 31439184 ~ 31439452 (-) True G132181
TU152285 lncRNA downstream 36239 31438361 ~ 31438655 (-) True G132180
TU152279 lncRNA downstream 43341 31431198 ~ 31431553 (-) True G132174
TU152257 lncRNA downstream 79680 31394994 ~ 31395214 (-) True G132153
TU152319 lncRNA upstream 1306 31568460 ~ 31576217 (-) True LOC118939115
TU152361 lncRNA upstream 30243 31597397 ~ 31604712 (-) True G132246
TU152363 lncRNA upstream 50883 31618037 ~ 31623113 (-) True G132248
TU152377 lncRNA upstream 64827 31631981 ~ 31632506 (-) False LOC110486999
TU152393 lncRNA upstream 105073 31672227 ~ 31672676 (-) True G132278
XM_021558832.2 mRNA downstream 86345 31366329 ~ 31388549 (-) True LOC110486958
XM_021558844.2 mRNA downstream 114675 31357834 ~ 31360219 (-) True LOC110486970
XM_021558814.2 mRNA downstream 122262 31317605 ~ 31352632 (-) True LOC110486940
XM_021558825.2 mRNA downstream 174918 31298133 ~ 31299976 (-) True pkdc
XM_036945727.1 mRNA downstream 175047 31298133 ~ 31299847 (-) False pkdc
XR_005036376.1 mRNA upstream 2067 31569221 ~ 31576243 (-) False LOC118939115
trnap-agg-2 mRNA upstream 9634 31576788 ~ 31576859 (-) True trnap-agg-2
XM_036945731.1 mRNA upstream 10291 31577445 ~ 31582044 (-) False LOC110486984
XM_036945730.1 mRNA upstream 10291 31577445 ~ 31590842 (-) True LOC110486984
NM_001165192.1 mRNA upstream 24992 31592146 ~ 31595728 (-) True dctn3
TU152092 other downstream 276082 31197073 ~ 31198812 (-) True LOC110486868
TU152142 other downstream 278602 31192466 ~ 31196292 (-) False LOC110486852
TU152378 other upstream 68166 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1171675 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1171675 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1181054 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1645510 33212664 ~ 33225102 (-) True LOC110487618

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019404 True 1546 mRNA 0.51 13 NC_007127.7 6957602 ~ 6987599 (+)