RNA id: XR_005036376.1


Basic Information

Item Value
RNA id XR_005036376.1
length 621
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC118939115
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31568460 ~ 31576243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCGCAAGTACTAAAGTCCATCGTTAGTGTCACTGCTATGACAACAGGCTTCAAGCAAGTTGATGAGGCACACgtaaaatgtgatttaaaaaaatctgaactGCGAACCACAGACAGGCTCGTCTTGTTAGAGTAGCATGTCTCTGTTCAAGGCGTGTGATTGGTGAGCCGCGGTGCTGGGGGAGGAGTTTGACCAGGGATGCCTGTGTGTCAGAGATGTGGACAACAGCGGACATGATAAGATAGTGGTGGGCAACTACATGGGCATGCTGCGGGtcttctccccccaccctgcCAAGCCTGGAGAGCCAGGCCCACAGCCAGCTACTGGAGGTGCAGCTCAGAGACCCCGTCATCCAGGTTGAAGTGGGCAAGTTTTTCTCGTACTGCTGGTAATGTGGAGCATGGGGTTCAGTACCAGCTCAAGCGGGTCTATGAGCACATCCTCCAGAGGACCGCTTGCAACATGACTTATGGAACCTTCGGAGGGGTCACATGTTACACATCACATGAGCAGCTCAAATACTTCACATGTAACAGATATGCATTGACAGTTTAGTcacaaaccacacacacttttttcatttttttttttagttaaTTCATTGCCCTTTCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152310 lncRNA downstream 8787 31554458 ~ 31560434 (-) True LOC118936732
TU152326 lncRNA downstream 76551 31492467 ~ 31492670 (-) True G132212
TU152294 lncRNA downstream 91505 31477272 ~ 31477716 (-) True G132189
TU152293 lncRNA downstream 92625 31476289 ~ 31476596 (-) True G132188
TU152289 lncRNA downstream 98599 31470381 ~ 31470622 (-) True G132184
TU152361 lncRNA upstream 21154 31597397 ~ 31604712 (-) True G132246
TU152363 lncRNA upstream 41794 31618037 ~ 31623113 (-) True G132248
TU152377 lncRNA upstream 55738 31631981 ~ 31632506 (-) False LOC110486999
TU152393 lncRNA upstream 95984 31672227 ~ 31672676 (-) True G132278
TU152394 lncRNA upstream 101223 31677466 ~ 31677739 (-) True G132279
LOC118936732 mRNA downstream 2067 31474894 ~ 31567154 (-) False LOC118936732
XM_021558832.2 mRNA downstream 180672 31366329 ~ 31388549 (-) True LOC110486958
XM_021558844.2 mRNA downstream 209002 31357834 ~ 31360219 (-) True LOC110486970
XM_021558814.2 mRNA downstream 216589 31317605 ~ 31352632 (-) True LOC110486940
XM_021558825.2 mRNA downstream 269245 31298133 ~ 31299976 (-) True pkdc
trnap-agg-2 mRNA upstream 545 31576788 ~ 31576859 (-) True trnap-agg-2
XM_036945731.1 mRNA upstream 1202 31577445 ~ 31582044 (-) False LOC110486984
XM_036945730.1 mRNA upstream 1202 31577445 ~ 31590842 (-) True LOC110486984
NM_001165192.1 mRNA upstream 15903 31592146 ~ 31595728 (-) True dctn3
XM_036945734.1 mRNA upstream 55643 31631886 ~ 31643905 (-) False LOC110486999
TU152311 other downstream 26212 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 370409 31197073 ~ 31198812 (-) True LOC110486868
TU152142 other downstream 372929 31192466 ~ 31196292 (-) False LOC110486852
TU152378 other upstream 59077 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1162586 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1162586 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1171965 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1636421 33212664 ~ 33225102 (-) True LOC110487618

Expression Profile