RNA id: XM_021558888.2


Basic Information

Item Value
RNA id XM_021558888.2
length 6296
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110486995
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31589474 ~ 31624014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGAAACTACAAATAACTACAAAATGACTTATCGATTATTTAGCGAATAATAATGAGCGTCACTAACCAACAACTTTATAGGTCCTCTTTGCACTGAATACAACCATCTCGACATGATTATTGCAATACACTACAATGAACGCTGGATGTCACTCTATACTGCAGGTTACACCTCGTCAGCGAAAAGGGGGATTTTCTTGCTTTTTTTCCTTGACAGGCGAATGACAACACCACCACGGCCCTCTTCCTTCATCGCAGCTGGTTACAAACGCTCTAGAAAAGTGGTTTGTAGCTAGAGAATACTTCATTTATGTGCCACTGGGAGCGACAGGAGGATGGCAGATGACAAGGACGTGCTGCGGGATGTTTGGTTTGGTCGGATTCCGACCTGCTTCACACTTTACCAGGATgagatcacagagagagaggccgaACCCTTCTATCTCCTCCTGCCAAGGGTGAGCTACCTGACTCTGGTCACAGACAAGGTGAAAAAGCACTTCCTGAAGGTCATGAAGGCCGAAGACGTAGAGGAGATGTGGTTTGATTTCGAAGGAACGCCACTCAAATGGCACTATCCAATCGGATTGCTGTTCGACCTACATGCCTCCAACACTGCCCTGCCATGGAGTATCACTGTGCACTTTAAGAATTTCCCAGAGCGTGACCTGCTCCACTGCCCCTCTAACTCTGTGATCGAGGCCCACTTCATGTCCAGCATCAAGGAGGCGGATGCCCTCAAACACAAGAGCCAGGTCATCAACGACATGCAGAAGAAAGACCACAAGCAGCTGTGGATGGGTCTGCAGAACGaTAAGTTTGACCAGTTCTGGGCCATGAACCGTAAGCTGATGGAATACCCCACAGAGGAGGGAGGCTTTCGCTACATCCCCTTCAGGATATACCTGACGATGAGTGACAGGCCATTCATCCAGAAGTTGTTTCGCCCCATCTCGTCCGACGGCTACACACACACGCTGGGGGATCTGCTGAAGGAGGTGTACCCCATGGCCATATCCAGCGACGACGAGTCCAAGCGCTACCAGGTGGTGATCCATGGGATTGAGCCCCTGCTGGAGACCCCTTTGCAGTGGCTGAGCGAGCACCTCAGTCACCCTGATAACTTCCTCCACATCAGCGTCATACCCGCGCCTAGCGACTGACACCCCTGGCAAATTTTGTAACACCCGGCAACTAGGAATGTTGCAAACTCCGAACGGACTCTTTAGAGAGCAGGAAAACCCACGTGACTGGGGGGGGACGAAGAGTGACGCAATCGCAGTGTGACGTCATCTCATTCAACTTGTCTCAAAAAGGAGCCCACCAGGAGAAAATGTACCCTTCTGTTCtccatctcttttcctctcctccttcgcCCTCTGTCTCTTTTGGACCATTATGTGTTTGGGGAAAGTTGTTCCGCCCAAAATGTGGAAGGCTAAGCAGAAAGAGGGCTGATCCGTTTAAAAAGAGAGGCAGCAAGATGCCGCttaccacctcctctctcctcttcctcctcctagagaaagagacagagcccCAACATGCCTAGTGGGACCCCCTACAAACAGAAGTTGCCTTAGTTTTCCCGAGTCACATCATGCGCTACACGGCTGGACGTTCATAAAGTCACACTGAGTttacatggttgtactgtatgccACTGAGGAGTGAAAGGGGATTTTTAAAGACACTTCTTCATTCTTTCTCTCACTGTATTTTTATATTCTCCATCTTCCTCACTGTATTTCctgtctctttcttctctctcttcctccctccccctctttctctctcgtgtcATTTACTGCCGATGCTCTCTCATCTCCGTAGCTAATTTATCTATTGGAATTCCTTCTGCTACTAATGAGACCGCTAAACTTCTCTCCATGCCAAGCcttggggttgtgtgtgtgtaatgtaattAGAGACATAATTTAAAGTCTCCTAGAGGGGGTGAGGAAGGTGTGAAGAGTACGAATGGAATcatgtctgtcttctctcttccGTGTCAAAGGGAAACGGAGCCAGACATGTCATTTGGAGTGTGTTGCAGTCGAAGGGGAGGGAAACTTTTGATGTCACACCTGTCTTAGCACGTCGGGCTTCCTCATTCGCCGCCTAGGATGATGGGAGAGGGGAGTTTACAGCTCAGTCAGGGCTGGGCTCGACGTGGGGTACTGTCTGAGGGGTAGGcatgtgcatacgtgtgtgtatgtacatgtctgtatgggtactttttacacattttgttgttacaaagtgggattaaaatgcaTTTCATTGTCATTTTTGGTCAATTATCGACACAAaacactctgtaatgtcaaagtggaagacaaATTGTAACATTTATTAACAAAATGCAAAAAAATTAAACTACTATATCTTGATAAGTATTCTCCCCCCTGAGACTACATGTTAGAAAtgcctttggcagtgattacagctgtgagtatttttGGCTAAGTAtataagagctttacacacctggattgtacactatttgcccattattctttaaaaaagtattcaagatctgtcaagttggttgttgatcattgctagatagccATTTTTATGccttgccatacattttcaagcagatttatgtcaaaactgtaactaggccactccagtgtagatttggctttgtgttttaggttcttgttctgctgaaaggtgagtttgtctcccagtgtctgttggaaagaacATTGAATCAGATTTAGCCTGTGCTTAGCcttattctgtttctttttatcctaaaaaaaactccctagtccttgctgatgacaagcaaacccataacatgatgcagccaccacgatgcttgaaaatatggagattggtacacagtaatgtgttgtattggatttgccccaaacataacgctttgtattcaggacaaaaagtaaatttctttgccacatttttttgcagtattatttaagtgccttgttgcaaacaggatgcgtgttttagaatatttttaaTCTGTACATGCTTCTTtgcactctgtcatttaggttagtattgtggagtaactacaatgttgttgatccatcctcagttttctcatatcacaaccattaaactctgtaactgtttttaaatcaccattggcctcatggtgaaatccctgaacagtttccttcctctccggcaattgagttaggaaggacacctgtatctttgtagtgattgggtgtattgatacaccctccaaagcctaattaataacttcaccattctcaaagggatattcagcgtCTACTGTACCAATCAGTGCCCTTCTTTGCgcggcattgaaaaacctccctgtctttgtggttgaatctctgCTTAAAATGTCCTACTCGATTGAGGGACATTAGCTAAatgtatgtggggtacagagatgggggtagtcattcaaaaatcatgttaaccattattattgaacacagaatgagtccaatttatgtgacttgttaagcacattttaactcctgaacttatttaggcttgccataacaaaggggttgaataattattgactcaaaacatttcagatttttttttaaatatacttttttgtaattccactttaacattatgggttattgtgtgtgacacaatctcaatttaatagctaaatgtggaaaaagtaaagtgatgtgaatactttctgaaggcactgtgtgtgtgcgtgtgtgtgtgtgtgactgcacaCAGCGGACACAGACTTTTGACTCAGTCACAAAGACACATGCTGATGATGAAAAGCAGAGCTAGACTCTCATCTTGCTGACATATTTGTCTTGTTGGGATTTCCCAGTCAACCTATTGGATTGAGTTGCTCAatactgacagctctggctgtaTCTCAATTGCAGAGATTTTAAATATCTCTATTGCATGTGTATACTGCCATTCCTCCTCCAAGCCCTTGGCAGCATGTCTCGCAACTCACCCAAAGGGATCCTCGGcaatcatttatttttcattacGATGGGgaagtacaggtaactgccacaATAAAGCAAaccccaacataaagtgtcttaatagggtgttgggccaccagaacagcttcagtgcACTTttacatagattctacaagtgtctggaactttattggagggatgcgacaccattctacCATgtgaaattccatcatttggtgttttgttggtggtggaaaacgccgtCTCAGGCACCActacagaatctcccataagtgttctttaaaccccctatgctttTTTCAGACCCTCTTTCAGTCTCTAAGATTtgattcatttagcagacgctctttttCAGATCTCTTCTAGCcttggtagccaaaataatgggtaCATGGGTACATGACCCTGagaatgatgggatgttaatttcttaattaactcaggaaccacacctgtgtggaagcgcctgctttcaatatactttgtatccctcatttactcaagtgtttcctttattttgggagTTACCTATATATGGGACACAATGTCTGACCCCTGTTCTCCAATTGTCCCTCTGTTCCCCAGGTCATCACTTAGTTCATCCTGTTGTGGTTGTTGTCGTGTTTTAATTCATGGCCATCGTCATTAAGGCTGAGGTGGCAACGAAAGGTCACTAAGCAGGTCACTGGGCATGCTCTGTACTTAGGCAGTGTGATGATtgatgtttgtgttttttttgcttTCACCATCAACAACAACCCCAAATGCTCCCCCAATGTGTTCCAACAATAGCCAATAGCCACTGTCCTAGTCATTGGCACTAGATTCCGCGAAACcgagctctctctcacacacacacacacacacacacatttgtttgtgTTTAACATGTTACAAGGGGCTGAGAGCAGTCAGAGGGTATCAGACACATGAGAGTGATTTGTAATTTAGAGGAATCCATGACTGTATTCCCTCCATGCTGCATCCCCGTGGGATAGAGAGCAAGATtagggagagaggatgagtgcGTAGCTGAGGTGGCCAACGGGCCTTTTCTCGGCACAAGCTCACTAAGGGGGATTTTCTGCTCTATATTTCTACATTTGGACTCTGAGCTTATTTACAAATACTGTAGTTTTTCttccaccacacaaacacacacacactagtcaaTATGCAAACAAGGGTTCTGAGGTACTTTTCTGTCCCTCTGCTGTTTGTCTTTTATCCCTTCCTCTACTTTCTCTTGGTGACAGCGATCATACTTACAGCACAGGTACAAACAGAACCATCCAGTCAGTGGAAGCGTTACTAATGAAATATTTCTTGATTAACGGGCGCTATCTTCAACTATCAGATCTTACCTGGATTCAGCGGTTTTCTCACTTTTAACTCTGcaacaaacaacaaaaatctgcattatttttctgtttttttatttgttttctcTCCAAATACACTATTTTGCAGTGGCTTTTCTTTTGTTTGCTACTTACTGCAATGATTACAATAAAATGCTGTAAAAATGTTTTTGTGTAGAATTAAAAATGAAATTGTTTTATACTGTAGTTCTGGGCTATGCCTGTCTTTTTGTTCCTGTTCTGGTTTGAGTTATCATGATTGGGGTTGTTATGCATCTTATTTCTacatcaaatgtttttatttctatATGAAAACCTAATCTCCCAGAGTTTGTCTTTGTCATTTATTGGTGTTTATTTGAGGTTCAGGGGGTTGTAAAGGGTGTACAAAATGTATCTGTGAATCGTAGACTTAGTTTTATTTTCAATCCTTTAAAAAAATAGCTTCAGCCCGTTTCTGAATCACTATTGTCTACCCTTATTATTCCATGTTTATCTCACGATCTAATCTCTTTTCAAGAGGGATGTGGTCTCTCTCTGGAATAAGGAAATGGCCATCCCGTCCCAGTCTCCACTTGTTGTAAACTAGTCACCAAACACATCTAAGAGATTACTCTCGTCattgtttctttctctttcaattCTTGGCACTACAAACACAGAGCgccttccctctctgtccatctctctcttttcctcctgcTTCAAAGGATGGAGAGAATTATGTCTGTTTTAACGAGGAAACAGCCTTTGAAGTTTGTAATTATTAAAAGGACAGAGTTCAGCTCTCTGGATGTTAGCAACCCTAGCTCTTTCATTTGCTTTTAgtcactccctctctcattccctttgtcttttctctctgtcacacactttTCTGCTTGTGTATACCTTTTAATGACAAGTATTGAGTTGATGAAAGTCAATCTGAAATTGTATTGTTAGTTCAAAAGGAAAAAAATAAACTACTGTCTAGCCAAAga

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007399 nervous system development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08339 ATG5; autophagy-related protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152038 lncRNA upstream 3239 31592140 ~ 31592593 (+) True G131970
TU152032 lncRNA upstream 17203 31577067 ~ 31578629 (+) False G131968
TU152033 lncRNA upstream 17203 31577067 ~ 31578629 (+) True G131968
TU152018 lncRNA upstream 34452 31560610 ~ 31561380 (+) True G131957
TU152004 lncRNA upstream 56395 31539012 ~ 31539437 (+) True G131946
TU152052 lncRNA downstream 2981 31626995 ~ 31627345 (+) True G131983
TU152057 lncRNA downstream 7950 31631964 ~ 31633994 (+) True G131988
TU152067 lncRNA downstream 33393 31657407 ~ 31657610 (+) True G131998
TU152069 lncRNA downstream 35239 31659253 ~ 31659535 (+) True G132000
TU152071 lncRNA downstream 45200 31669214 ~ 31669425 (+) True G132002
XM_021558857.2 mRNA upstream 229510 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA upstream 229510 31360408 ~ 31366322 (+) False eaf1
XM_021558804.2 mRNA upstream 279919 31300002 ~ 31315913 (+) True LOC110486933
XM_036945726.1 mRNA upstream 301255 31262054 ~ 31294577 (+) False LOC110534710
XM_021558792.2 mRNA upstream 334702 31259078 ~ 31261130 (+) False mxtx2
XM_036945737.1 mRNA downstream 217724 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 217725 31841739 ~ 31857595 (+) True LOC110534719
XM_036945740.1 mRNA downstream 289666 31913680 ~ 31931649 (+) False LOC110487037
XM_036945739.1 mRNA downstream 289666 31913680 ~ 31933154 (+) False LOC110487037
XM_036945741.1 mRNA downstream 289667 31913681 ~ 31931649 (+) True LOC110487037
TU151909 other upstream 229510 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 232619 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 302798 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 845878 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 895209 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 233634 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 233672 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1543424 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1872440 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2190019 33814033 ~ 33814483 (+) True G133760

Expression Profile