RNA id: NM_001165192.1


Basic Information

Item Value
RNA id NM_001165192.1
length 998
RNA type mRNA
GC content 0.45
exon number 7
gene id dctn3
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31592146 ~ 31595728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTACGTCGTTACAAGGATCCAAATCCATTTGTTGTGCTCTCTGAATCAAGAATGGATAGGAAAGTTGAAGTGGATAACCTCGAAACGCGTCTTGAGACGCTGGAAAGTCGTATATACGGTGAAAGAAGGAACAAGGGAGGGAAACCCATGAAGTGCGCGGATTCCCTCTCCAGAGTTCAGGCCGCCCTTGCAAACACTGCAAATAAGAGGGAACGAGTGAAGATTCTACACAAAAAGATTGAGGACCTGCTGAAGTATCTGGACCCTCAGTTCACTGACCACATCACTGTTCCTGATGCCATGAAGCTGGAATTCATCCTGGCTGAGGAGGACTTCCTGCTTTCCCAGGCCACCCTTCTGGAGCAGGTCAGCAACCTCCAGCCACTATTGGACAGCAACTACATCAGAGATGTGCCAGAGCATGCCACCAAGCTACAGCGTTTGTCTCAGATTCACATCAAAGAGCAGGACCAAACTGAAGCCCAGTCCCTAGAGGTTAAGAAACTGTTTGAGGAGTACAACAAAATGATGTTCCTGCTGTCCAAGCAGTTCACCCAGTGGGATGAGAGCCTGCGGAAAGTGGAGGAGGCAAAGGGCATCCGTCAAGTGGAGTAGCGACCATGTTCAGTGATGACTGTAATGACAGTGTCACGGCATGATGTCATCTGTGTGTCAAGGGTCCTATATGCAGCTTAATGTAACTTACTGGGTATTATTTATTTACAGCTACATCAGAGACATTTGcttagttttaaaaaaaaacattttttatcctTGTTCATTTATTCAACATACAATGTACCCATGCATTCCAATTGTGCAACACTGCTCCAGGCAGTCACAAGACACTGCTTTTTTTCTGGGTCGGTTGACAGTAGAAGAGTGTAGAGAAGAATTTGCACTAACTTTCTTCTTCCACGAAGTCCTGGTTTTAAACAGTTTCATCAGACCGCATGACCGCAAATGTAAAGTAATTGCAATAAAATCCATACTAT

Function

GO: NA

KEGG:

id description
K10425 DCTN3; dynactin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152319 lncRNA downstream 15929 31568460 ~ 31576217 (-) True LOC118939115
TU152310 lncRNA downstream 31712 31554458 ~ 31560434 (-) True LOC118936732
TU152326 lncRNA downstream 99476 31492467 ~ 31492670 (-) True G132212
TU152294 lncRNA downstream 114430 31477272 ~ 31477716 (-) True G132189
TU152293 lncRNA downstream 115550 31476289 ~ 31476596 (-) True G132188
TU152361 lncRNA upstream 1669 31597397 ~ 31604712 (-) True G132246
TU152363 lncRNA upstream 22309 31618037 ~ 31623113 (-) True G132248
TU152377 lncRNA upstream 36253 31631981 ~ 31632506 (-) False LOC110486999
TU152393 lncRNA upstream 76499 31672227 ~ 31672676 (-) True G132278
TU152394 lncRNA upstream 81738 31677466 ~ 31677739 (-) True G132279
XM_036945730.1 mRNA downstream 1304 31577445 ~ 31590842 (-) True LOC110486984
XM_036945731.1 mRNA downstream 10102 31577445 ~ 31582044 (-) False LOC110486984
trnap-agg-2 mRNA downstream 15287 31576788 ~ 31576859 (-) True trnap-agg-2
XR_005036376.1 mRNA downstream 15903 31569221 ~ 31576243 (-) False LOC118939115
LOC118936732 mRNA downstream 24992 31474894 ~ 31567154 (-) False LOC118936732
XM_036945734.1 mRNA upstream 36158 31631886 ~ 31643905 (-) False LOC110486999
XM_021558905.2 mRNA upstream 36158 31631886 ~ 31648678 (-) False LOC110486999
XM_021558922.2 mRNA upstream 169473 31765201 ~ 31777786 (-) False LOC110487017
XM_021558927.2 mRNA upstream 169473 31765201 ~ 31777786 (-) False LOC110487017
XM_021558916.2 mRNA upstream 169473 31765201 ~ 31777787 (-) True LOC110487017
TU152311 other downstream 49137 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 393334 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 396426 31192466 ~ 31195720 (-) False LOC110486852
TU152143 other downstream 396960 31192466 ~ 31195186 (-) False LOC110486852
TU152378 other upstream 39592 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1143101 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1143101 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1152480 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1616936 33212664 ~ 33225102 (-) True LOC110487618

Expression Profile