RNA id: XM_036945737.1


Basic Information

Item Value
RNA id XM_036945737.1
length 3849
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC110534719
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31841738 ~ 31857595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATGGCTACTAACGCATGCAGTCTGTATTAACTCCAGTTGGGGGCGAACATTTCAAAGATTTGTGCAGTGAACACATCATCACTCTAGCAAAATGTGTGGATAGAGCGGTGGATAGAAGGTACCCATCCAGTTACTTCTACAAAACGTATTTCACAGCCGGAGATTTACGATTATGAAAACATGGTCGTAAAAACTAGAAAACAAAACGTGAAGGATCAACCGCCGCAGCCCAACGTCGACGACAGAGACAGGAATCCGTTCGTATCGCCAGGCACCGGGAAAAGTAGACGAGCAGGAAAGGGCACCCCTTTCAACAGCTTGCTTCACAATAAGAATGGACTATTTCCAGGGTTTTCATTCATCAGAAGTAAGCTTGGCCTTACTCCGTCAGCTTTTGTGAAACTCGGAATTACTCTGGTTCTTGCTGCTCTGGCTGGGTATTTACATTGGTACCATCTCTCACGCCTCTTTGAAAATGACAGGCACTTCTCACATCTGTCAGGGCTGGAAAAGGAAATGGCATTTCGGACAGAAATGGGTTTATACTACTCCTACTTCAAGACCATCATTGAGGCCCCAACCTTTATCAACGGCCTGTATCTGGTCATGAACGATCGGCTTACAGAGTACCCACTGGTTATAAACACACTGAAGAGGTTCAATCTCTATCCAGAGGTGGTCCTGGCCAGCTGGTACAGAATCTACACAGATATAATGGAATTCTTTGGACTCCCCACCAAGATGTGTTGGTCCAtcaatagaggagagggtatggcTGCAGTGGACGGCTGTGAAGgtatGGGTGACCCTGCATATTTCTACGTGACCTTTGTGTTCCTCCTCAATGGTCTGATGATGAGTCTGTTCTTCATCTACGGGACCTACCTCAGTGGCAGTCGGCTTGGGGGTATGGTCACGGTGCTGTGTTTCTTCTTCAACCATGGAGAGAGCACCCGGGTCATGTGGACTCCGCCCCTGAGGGAGAGCTTCTCCTATCCCTTCCTGGTCCTGCAGATGTTACTCCTCACCCACATCCTCCGGACACGCAACCCCAGCAGAAAGGCCATGTGGGCGTTGGCCATCTCCAATTTGTGCTTCATGCTGCCCTGGCAGTTTGCCCAGTTTGTGCTGCTTACCCAGGTGGCCTCGCTCTTTGCCTCGTACATCCTGGGATACATAAGCCCCACCAAAATGCAGTCCCTCCTAGTGACACACATGATAACACTTGCCGTGTGCTTTGTTCTGATGTTTGGAAACTCCATGCTGCTGACATCATTCTACGCCTCCTCACTGGTCTCCATTTGGGGAATAATTGCCCTGCGGGACAAATTTGCAGAAACCTTCAAACCTGGCCTCATCACATGgGTCATGCAGGGCCTGGTATGTGTTGTCTCCACGGTCATTCTCAAGTTCATGCTGTCAGCTGTCTTTGGAGCCTCTGATGATGCTCACATCAGTAGCTTAATAAAGTCCAAGTTTACCAGCTACAAGGACTTTGACACCATGATGTATACCTGTGCTGCTGAGTTTGACTTCATGGAAATTGAGACCCCACTGCGCTACATCAAGACACTGCTGCTTCCCATCAACATGCTGGTGGTTGCTGTCATAGCAGGACGGACCATCCAGGATGTTGTGAGGTtcctgagggaaggagagaagtatTCTGTCAAACCTGAAGACGATGATGACGATGAACACCCAGAAATGTTGGCAAAAGGAGAGttgTTTGGCTGGATAGGGGAGAAGTTCAAGCTCCACGTGATGGTGTTTGGCATCCTGTCCATCATGGCCATGCAGGGTGCGGCCAACCTGCAGGCCCAGTGGGGCATCATGGGAGAATTCAGCAACCTACCCCAGGAGCAGCTGCTGGACTGGATCAGAGACAACACACCGCCCAACTCTGTGTTTGCTGGAGCCATGCCCACCATGGCCAGTGTGAAGCTGTCAGCCGGCCGGCCCATCGTCAACCACCCACATTACGAGGACGCTGGACTGAGGGAGAGGACTAAGCTGGTGTATGCCATGTATAGCCGCAAGTCTGCCGAGGTGGTGAAGAGGAACCTGATGCAGATGGAGGTGGACTACTTTGTCCTGGAGGACTCGTGGTGCACCCGGCGCTCCAGGCCTGGCTGCAGTATGCCTGAGATCTGGGATGTGGAGGACCCTCAGAATGCTGGGAAAGTCCCCctctgtactctcatgtccaggGACTCCAGGCCCCACTTTGCCACCGTTTTTCACAACAACGTTTACAAAGTTCTAAAAGTTCCCAAAGCAGCTAAAGAGCTCAGATAACAGCAGGGTTGGCCTGTTTTTGGTGCTACCGTCTAGTATTTCCACCAGCCTGGTGCGTGTTTTTATATAGTTCCCTTTCCTGTTGGTCTGTCTCCTTTGGAGGTGCCACAGCTGCGTTTTACGTCTCCCTTTTTGAGGCTCTGTTAGAGCAGTGGACTGACGTGATGGGCTAGATAAGAGTCCCCACTTGTGTTGTGTAAGCATTTCATTTTATGCGAGGTTATACTAAAAGTTGTTCTTAAAGATAGACATGCATtttatttgtgtgtattagtACATTTTGGATGTCGGGCATATTTAGTTTTTGTACTTTTATGCCCTTTTTGCATATTAAGAATTGTCATTATTTAGTGTAATTTTTTTGATTCAGTGATGTGTGTAATAATTTTGTTATTTGCCAAAGCAAAGTGTAGTTAGTATAACTACTAGTGTTACAGCTGCAAGTGTCAGCTTAATGTAGCACACCTGAAATGTCCTTTTTAAGAGAAGCGGAATATGATAATCTGCAAACAGATTTTTCCCAACAACCTATTGCAACTTGTAGCAGTGCATTATTTTAAGCATTAGCGTAATGACCTACCACCATATATCAGTGGTTTAGGACCCTGTATTGACATACAGAAAACACTAGGCATCTTTTTGGAGTTGTTAAAGTCATGCCAATTTAGCGTCATTGCTTTGTAGTCCACCACAGGAAGTTACGTCATTCATTTGTAGCCTTTTTTTGCACCTCAGTGGCCTTTgcacatgtcacaacagcaacatAATTGAATTCAACAATGTATTATGACAACAACAAAACCATTTAGTTTAATGATTTGAGTTGTAATGTGGTTACTTCCCCATTTTATTTTGGGGATATAGCTGTGAAAGACTACGCCACTCTGGACTCCACTTTGCACTGGTGTGCTCTACTCTCTTAAAACCACTTTCCCCTTTTGTTCATGCAGCTCTGAGTTGTGACTGTGAAAGTCCCTTTGCCACTCTGAGGTCAAGGGTCAAACAGGAGAGTGCTCCAGAGCTCCACTTAACTGGAGTGTCGTTCTCATTATCCCTGTGACTCATTCTGCCTTTTTACCAGTGTGGCTTTGAAGTTACTTAACAACCCCAGTGTAATCATTCCAGTGTAAAAGCTACAGTATTGTTGGGTACAAATCATCTCACCAATACAGGTGAGGCATTTTAGCAATAAGCTGTTCGTTACTCAGACTTGAAGGTTTCTACATATTATACAACATTCATCAATTGTAATAGTTTCAAGCAGCGTTTTCAATTAAATGCAAGAAGTTTATTTCAATGTATTCTGCTATTTCTGTGACTGTTCATGAATAGCACAGCAAGTCTTTTATGCTAAGTTTATTTTTGGTTATGTCCAAGATATACAGTAAGGTACTGAAGTAATCTTGAAAGCAAAATGCCTGTTTATAGTGGTGGAGCGGTGACCACACAATTTGAAATATTTTGACATCAACATTTCTTGTGACAGGCCTAGCTTTGTCTAATGCTTGTTGATTTCATCTGtattttgaaaataaaatgtttatcaGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152083 lncRNA upstream 144658 31696846 ~ 31697080 (+) True G132014
TU152081 lncRNA upstream 145446 31696060 ~ 31696292 (+) True G132012
TU152080 lncRNA upstream 146289 31695190 ~ 31695449 (+) True G132011
TU152073 lncRNA upstream 159043 31681888 ~ 31682695 (+) True G132004
TU152071 lncRNA upstream 172313 31669214 ~ 31669425 (+) True G132002
TU152553 lncRNA downstream 45445 31903040 ~ 31903689 (+) True G132402
TU152558 lncRNA downstream 55361 31912956 ~ 31913253 (+) True G132407
TU152564 lncRNA downstream 76362 31933957 ~ 31934251 (+) True G132413
TU152567 lncRNA downstream 79529 31937124 ~ 31937342 (+) True G132416
TU152568 lncRNA downstream 81600 31939195 ~ 31939419 (+) True G132417
XM_036945732.1 mRNA upstream 217724 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA upstream 217724 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA upstream 217724 31595832 ~ 31624014 (+) True LOC110486995
XM_021558857.2 mRNA upstream 475416 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA upstream 475416 31360408 ~ 31366322 (+) False eaf1
XM_036945740.1 mRNA downstream 56085 31913680 ~ 31931649 (+) False LOC110487037
XM_036945739.1 mRNA downstream 56085 31913680 ~ 31933154 (+) False LOC110487037
XM_036945741.1 mRNA downstream 56086 31913681 ~ 31931649 (+) True LOC110487037
XM_036945742.1 mRNA downstream 84371 31941966 ~ 31974601 (+) False LOC110487045
XM_036945749.1 mRNA downstream 84485 31942080 ~ 31973874 (+) False LOC110487045
TU151909 other upstream 475416 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 478525 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 548704 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 1091784 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 1141115 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 53 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 91 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1309843 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1638859 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1956438 33814033 ~ 33814483 (+) True G133760

Expression Profile