RNA id: XM_036945738.1


Basic Information

Item Value
RNA id XM_036945738.1
length 4047
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118939268
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31867097 ~ 31871227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaacggtagccatcttgaagaatgtggggacaatagactgggataaggattgattgaatatgtccgtaaacacaccagccagccggTCTGTGCATGCGCTGAGGACGTGGTTCGGGATGCTGTCTGGGcgaacacgtttaaatgttttactcacgtcagccacggagaaggagagggggcgcagtccttgttagcgggccgCGACGGTgacactgtgttatcctcaaagcgggcaaagaaggtgttttgTTTGTATGGAAGCGTGACCTCGgtatccgtgacgtggctggttttctttttgtagtccgtgatttcctcTCAGATCACACAGAATGTCACCATGCcagtgattgaagtggatttaccaagtgacatcaataagggatcatagctttcacctggattcacatggtcagtctatgtcatgttttgtacaatcagtatatatacagtagttaCAAAGGTGACCAATGAAGTGTTCACACAGGTGAGAGACATGCTTAAGCATTTGACAGGGGCAGGGCCAACCTGTATTGGATGAACAAGAAGGGGGACAGACGCTGCGCCATCACTGGCATGGTGATGATCTGTGTGATCTGAGAGGAACACTTCACGGCAGACCACCCCTTCCTCTTCTTCATCAGACAATAAGACTAACTACATCCTCCTCCTCGGCAGGTTTTCCTCTCCTCATTGGAATAGGGATGGTATTGTAGTAACAACTGAATACACCAAGCCAAATGAAAAATTATATTTAGTTTGGACAGTATCATTGTGAATGATGATGGTTCCCCCTTACACTCTGTTAAGATTTGAATTGAATAATGCAATTGACACAACCTTCCTTATCTGTTGAAGGATCCAAACAATGGTCAAAACATCTACAATCCTATTAGAAAATGTTGTGGTgtgattatttattttacaatattTCCATGTTGGTAGAAATGAATCATAATCATCATAATATCATTTGTTTTAAAGCAAGCACATTTAGAATATAAATCATCATAAATAAGAAATGATTAAATCAAGAAACACTCAAATGTAACCGGCATCAActggaaaacaatacaaaaatCAGGACTTATATAGTATGTATTTTGAAATACATACAAATCATTGTGCATCTCCTTATGTTGTAATCAATGCGTTATGTTGTCAGAGGCCCAGCAGCAGAGGGACTAGGCTCAGTCTGATGGACCAGGCTATAGCTGTTACAGGCACATTGGTTAAAGTTACAGAGGCTGTAGTTACAGGGGATGTAGTTGCAGTTACAGATACCGGCCCTGTGTTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACAGGGGCTTTGGTTACAGTTTCAGGGGACGTTGTTATAGGTAAAGGGGCTATAATTACAGTTCAAGGCGCTGTGATTAGTTACAGATGCTACAGAGGCTGTAGATAAAGGTAAAGAGACTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTATGTGTTGTAGTTACAGTTACAAGGGCTGTTACAGTTACAGGGATTGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGAGGATGTAGTTACAGGTACAGGGGATGTAGTTACTGGTACAGgggatgtactgtagttactggtACAGGGGATATAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATATAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGAATGTAGTTACAGGTACAGGGGATGTAGTTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGCAGTTATAGGTACAGGGGATGTAGTTACAGGCACAGGGGATTCAGTTATAGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACAGGGGATTCAGTTAAGGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACTGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACATTGTAGTTCATTCGCCAGCGAACTGGGGAGGAGATCTGTAGGAGGAGAACAGATCTACTGTACAGTAGCTATAAATAACTATTGTTCTGATCTTGTTGTTGGTaatgcaatggaaacacattcAGGAACCATGTTGTCTGGTTCTCCTTAGTTCTCGTTTGTCCTGGTTCTGATAGTGGAATGGAGGCAATGagatattacagtacagtagctcTGACTTttctgatagctactttattgaggacaaatatacttactgtatgaattataatctacataataattACCATATATTATTGCTGTAGGATGATTTTCCcactgtagcaaactgtctcaaattaagatcctataaaTGTAAGACACAGTCCGATCATATACTGTATTTCTACAAACAATGACAGCTGAAATGAACACATTAAATACATTGTTGGAAACACAAACATTACTTAGGTAATAGACACAGGTATCTTACCATTCAGAGTTTGATTGTTGCAGCCACTGAtgcagcagagctggttagaggCAGTGCAAATGAAGCCCTTGTCTTTTGACACTGGTTTCAGTGCACAGAGGAGTTCTGCAGTtggaggtagtgatggatgctgCATTGAGAGTACCTGTAGTGGACAAAACAGGTTAAACATTATCAGACGACACATACACAGGCCTGAAATATCTTCTACATATTAATTTTACTCAAAGCAAGACTGTTGTCAATGACTGATTAACAAGGCAACAATAGTAAAAACATGATAAGCATATGtaatacatatttatattagacagCATTTGGTCCACTGGACTGAGCAGAAGGATGTCTGTGTTCTCCTCAATGTCCAGCTCAGTTGAGCAGTTCTTCAGTGGGATGGTGGGGGCGGTGAACATGCCAAGCAGAGCACTAATCTTGGTCATCTACACACACGcgtgcatgcacaaacacacatgtgcacacacacacacacacacgtttgttttactatccttgttggACTGAATAatttattcccattcaaaatcctattttccctaacccctaaacctaagcATGACCCTAACTCTTAAAcctacccctaaacctaacccctaaccctaattgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152420 lncRNA downstream 154012 31712874 ~ 31713085 (-) True G132305
TU152401 lncRNA downstream 170147 31696749 ~ 31696950 (-) True G132286
TU152394 lncRNA downstream 189358 31677466 ~ 31677739 (-) True G132279
TU152393 lncRNA downstream 194421 31672227 ~ 31672676 (-) True G132278
TU152377 lncRNA downstream 234591 31631981 ~ 31632506 (-) False LOC110486999
TU152740 lncRNA upstream 42483 31913710 ~ 31915220 (-) True G132581
TU152754 lncRNA upstream 69489 31940716 ~ 31941065 (-) True G132594
TU152772 lncRNA upstream 107365 31978592 ~ 31979092 (-) True G132612
TU152773 lncRNA upstream 109223 31980450 ~ 31980955 (-) True G132613
TU152774 lncRNA upstream 110643 31981870 ~ 31982088 (-) True G132614
XM_021558916.2 mRNA downstream 89310 31765201 ~ 31777787 (-) True LOC110487017
XM_021558922.2 mRNA downstream 89311 31765201 ~ 31777786 (-) False LOC110487017
XM_021558927.2 mRNA downstream 89311 31765201 ~ 31777786 (-) False LOC110487017
XM_021558905.2 mRNA downstream 218419 31631886 ~ 31648678 (-) False LOC110486999
XM_036945734.1 mRNA downstream 223192 31631886 ~ 31643905 (-) False LOC110486999
LOC110534727 mRNA upstream 17803 31889030 ~ 31892905 (-) True LOC110534727
LOC110534740 mRNA upstream 26239 31897466 ~ 31906130 (-) True LOC110534740
XM_036945753.1 mRNA upstream 155999 32027226 ~ 32056238 (-) True LOC110487053
XR_002468177.2 mRNA upstream 197591 32068818 ~ 32075136 (-) True LOC110487099
XM_036945766.1 mRNA upstream 224304 32095531 ~ 32171431 (-) False LOC110487106
TU152378 other downstream 218302 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 324088 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 668285 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 671377 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 867602 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 867602 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 876981 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1341437 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1994261 33865488 ~ 33865937 (-) True G134668

Expression Profile