RNA id: LOC110534740


Basic Information

Item Value
RNA id LOC110534740
length 1581
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110534740
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31897466 ~ 31906130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATGCTGCCATGACCTTAAACCCCTGGTGGCAACTGGACCTGTTTAATAACTACAAAGTGTTCCACATGACCAACAGAAAGAACATGAATTATTACAGCAGACTCAATGGAGCTGAGATCCGCATCATAGATTCCCTGGATGACAACAATGACAACAACAATCCCAGCTCCCAGTGTAACAGGATGGAGGGTCGATACATCAGCGTGGTCATTCCAGGAAGAAGTGAACACCTGACCCTGTGTGAGGCGGAGGAAAATCTTGCCTTGTGGGGAAAAGCTACACAGTCAGACCTTGTCGATAACCCATATAACGGTTGGAGTCATGCCTCTAATGCCATTGACGGGAACCGCGATTCACATTTTTATCATGGGTCTTGCACTCACACTGACAGTCAGACTAACCCCTGGTGGAGAGTGGACCTGCTtgatacctacatcaCCTCCGTCACCATCACCAACAGAGGGGACTGCTGCCACACAAATATCAACGGTGCTAAATTCGTAATTGGGAAATCCTTACAGGATAATGGCATTCACAACACACTAGCTGGGGTGATTACCTCCATTCCAGCAGGTAGATCTCTCACTCTGAGTTGGAACAAAGGTATTGAAGGACGTTATGTGGCTGTGGTTCTACCAAAGACGAGCACTCTAGTACTCTGTGAAGTGGAGGTTTATGGGTACCTCGCCCCAACTGGAAAGAATGTGGCTCTACGGGGAAAAGCCACCCAGTCGTCATTGCATGGGTTTGGGTTTGCTTACAATGCCATTGATGGGAACCGTGACAATGCTATGGAACATGGCTCCTGCACTCACACTTCTGGTGACCTTAACCCCTGGTGGCGATTGGACCTGCTTAATACCTACAAAGTgttctccatcaccatcaccaacaGAAATAATCTTTCTTATTCCAGCAGACTGAATGGTGCTGAGATCCGTATTGGAGACTCCTTGGACGACAACAATGGCAACAACAATCCCAGGTGTGCTGTGATCTCCGCTTATCCAGCACCTTCAAGTGTAACGTGGTCATTCCAGGAAGGAAGGAGTACCTGACCCTGTGTGAGGTGGAGGTCTATGGGTCACCACTGGACTGACAGATCCAGAACATTTATTCCTAAAACTGAACGTGAAGCGCAGGACACACTGTTTTGTGGGCTTAATATGCTTAGATAACTTATATGTAGGTAACATTCTCTCTGTAAGGAAAAGCCATGTTGAAATTCATTTAACAGTTTAGCTTTATAATTTCACATGGTAAATATAGGTATATTGAGTACATTCATTTAGATCTGTTTTATTGTAACTGTACATACTGTAACGGCTCCtaacattgtactgtattgtatgttAATGTATTTGGAGGAGATAAAGGGTAACACAACACGTACGGTTCAGAGTAATTTCTTAATGTCATCTAGAAAGCAatgatcaaatatattttgataggAATATTATGGCCTGTGATATGTCTATTCACGTGGGTTTCATGAACACGTCAGTAGCTATAACAATTAAATAATGATGAGACGGGAGATGGGAATCAATTCAACCATTTATCTAGAATGTGCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152420 lncRNA downstream 184381 31712874 ~ 31713085 (-) True G132305
TU152401 lncRNA downstream 200516 31696749 ~ 31696950 (-) True G132286
TU152394 lncRNA downstream 219727 31677466 ~ 31677739 (-) True G132279
TU152393 lncRNA downstream 224790 31672227 ~ 31672676 (-) True G132278
TU152377 lncRNA downstream 264960 31631981 ~ 31632506 (-) False LOC110486999
TU152740 lncRNA upstream 7580 31913710 ~ 31915220 (-) True G132581
TU152754 lncRNA upstream 34586 31940716 ~ 31941065 (-) True G132594
TU152772 lncRNA upstream 72462 31978592 ~ 31979092 (-) True G132612
TU152773 lncRNA upstream 74320 31980450 ~ 31980955 (-) True G132613
TU152774 lncRNA upstream 75740 31981870 ~ 31982088 (-) True G132614
LOC110534727 mRNA downstream 4561 31889030 ~ 31892905 (-) True LOC110534727
XM_036990495.1 mRNA downstream 14405 31857694 ~ 31883061 (-) True LOC100136303
XM_021617417.2 mRNA downstream 14406 31857694 ~ 31883060 (-) False LOC100136303
XM_021617426.2 mRNA downstream 14406 31857694 ~ 31883060 (-) False LOC100136303
XM_036990493.1 mRNA downstream 14407 31857694 ~ 31883059 (-) False LOC100136303
XM_036945753.1 mRNA upstream 121096 32027226 ~ 32056238 (-) True LOC110487053
XR_002468177.2 mRNA upstream 162688 32068818 ~ 32075136 (-) True LOC110487099
XM_036945766.1 mRNA upstream 189401 32095531 ~ 32171431 (-) False LOC110487106
XM_021559031.2 mRNA upstream 189401 32095531 ~ 32218170 (-) False LOC110487106
XM_036945763.1 mRNA upstream 189401 32095531 ~ 32218170 (-) False LOC110487106
TU152378 other downstream 248671 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 354457 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 698654 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 701746 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 832699 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 832699 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 842078 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1306534 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1959358 33865488 ~ 33865937 (-) True G134668

Expression Profile