RNA id: XM_036945741.1


Basic Information

Item Value
RNA id XM_036945741.1
length 3460
RNA type mRNA
GC content 0.60
exon number 26
gene id LOC110487037
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31913680 ~ 31933154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTCGAAAACCTGCTTTGTGAGTGACGCGGTTGAGCAGCGAAACAGCAGCGGACAAGACAAGAAACAATGGCGACAGCGGCAACTGCAGCGGGTGGAACGGGTTCAGGGGGACCAGCAGCCGGCCTTATGGGCGTCGGTACTGCGGTGGGCcgtaagaaggatggaggtcctTCCTCGAAATACTGGGAGAGCGCAGAAACGGTCTCTCAGATCGATTCGGTGCGCCAATGGATCGGGAAACACTACAAAAAGTATGTCCAGGCAGACTCTCCCTCCAATAAGTCCCTGGCAGGGCTGGTGGTGCAGCTGCTTCAGTTCCAGGAAGATGCTTTCGGACGGAGGGTCAACAACCCTGCCCTCACCAAGTTACCTACCAAGAGCTTCCTGGACTTCAAGGCAGGGGGTGCTCTGTGTCACATCCTGGGCTCTACCTACAAGTTCAAGAGCGAGCAGGGCTGGCGTAGGTTTGACCTGCAGAACCCCTCCAGGATGGATAGGAATGTAGAGATGTTCTTGAATGTAGAGAAGACCCTGGTTCAGAATAACTGCCTGACTCGACCAACCGTATTCCTGGTGCATGACATGGAGCAGAAGCAGGCCAATAAGCTGAAGGACATCATCAAGAGACACCAGGGCTCCATCACTGAGGACAAGTCTAAGGCCACCCATCATATCTACCCCTCTCCAACCCAGCAGGAGGATGAGGAGTGGCTGCGTCCGGTCATGCGTAAGGACAAGCAGGTGCTGGTGCACTGGGGCATGTACCCAGACAGTTATGACACCTGGGTGTCCACCAGTGACGTGGAAGGGGATGTGGAGGACCCACCCATCTCTGAGAAGCCCTGGAAGgtgCATGCCAAGTGGGTCCTGGACACCGACGCCTTCAACGAGTGGATGAATGAGGAAGACTATGAGGTGGACGAGAACAAGAAGACTGTGAGCTTCCGCCAGAGGATCTTCCctaaggaggaggagTCTTCCCGTACACCCGATCGTAAGGAGCGCAAGGCCAACGCCGCCGGGAAGAAGAGGAGGCGCTCGCCATCTCCCCCGACCACCCCAGCCGAGTCTCGCAAGAAGGGTGGCAAGAAGGGGAATCCTGGGTCTCACTGGAAGCGTCGTGGCCACCgtggcgaggaggaggaggaggaagaggacctgaCCAAGGACATGGAGGACCCCTCGCCTGTTCCCAGCATGGAGGAGGTCACTTTGCCCAAGAACGTGAACCCTAAGAAAGATAGCGAGAACACCCCAGTGAAGGGAGGGGCCGTGGCTGACTTGGATGATCTGGAGGATGACTCTGTGGTCTCCGGAGGCAAGgaggaggaggagcagggcaAGGCCGAGGTCAACCGCCTCATCGACTCAAGCGAGGACAACGTGACCGAGCAGACCCACCACATCATCATCCCCAGCTACGCCGCCTGGTTCGACTACAACTGTATCCATGAGATTGAGAGGCGTGCACTGCCAGAGTTCTTCAACGGCAAGAACAAGTCCAAGTCCCCAGAAATATACCTGGCCTACCGTAACTTCATGATCGACACGTACCGGCTCAACCCCCAGGAGTACCTGACCTCCACCTCCTGCCGCAGGAACCTAACCGGAGACGTGTGTGCCGTCATGAGGGTGCATGCGTTCCTGGAGCAGTGGGGGCTGGTGAACTACCAGGTGGATGCTGAGAGCCGGCCCCTCCCCATGGGCCCCCCGCCCACCCCCCACTTCAACGTGCTGGCTGACACCCCCTCTGGCCTGACGCCAATGCACCACCGCCCCCCACAGATCCCCTCTGGCCAGCAGATGATCAACTTCCCAGAGAAGGGCAAAGACAAGCCCTCTGACATGCAGAACTTTGGCTTGCGTAACGACCTCTACTCCAAGAAGAACCCCAAGAGTAAAGGAACCAGCGGCGGCCGGGAGTGGACCGAGCAGGAGACTCTGCTCCTATTGGAGGCTCTGGAGATGTACAAGGACGACTGGAACAAGGTGTCGGAGCACGTGGGCTCGCGCACCCAGGACGAGTGTATCCTGCACTTCCTGCGTCTGCCCATCGAGGACCCCTACCTGGAGAACTCTGAGTCGTCCCTGGGCCCCCTGGCCTACCAGCCCGTACCCTTCAGCCAGTCAGGCAACCCTGTCATGAGCACCGTGGCCTTCCTGGCCTCCGTGGTGGACCCCCGTGTGGCCTCTGCCGCCGCCAAGGCAGCCCTGGagGAGTTTAGCCGTGTGCGTGAGGAGGTGCCAGCAGAGCTGGTGGAGGCCCATGTGAAGAAGGTGCAGGAGGCGGCCCGCAGCACGGGCAAGGTAGACCCCGCCTATGGCCTGGAGAGCAGCGGCATCGCAGGAACCGCCCCCGAGGAGCCCGAGAAGACCGAGCCAGCAGAGATCGAGAAGGTGGACACAGACTCCGACTCCCAGCAGCCTGACAAGgCTGAGTCTAAGGACGAGGCGGAGAAGCCCAGTGAGTCTGCTGAGAAGCTGGCCGAGGGACAGAAGGTGAAGAGCGAGACAGCCGAACCGTCTGaacgggaggaggaagagagtgagggaggagagggcaagGCTTCAGCAGACAAAGACAAGGAGGAGGCCATGGAGACCTCAGAGGAGGACAAAGAGAAGGAGGAGCAGGGAGCGAtgggaaaggaggaagaggagaggaagaagctaGAGCCGGACGGCGGGGAGGGGAACATTGCCACTGCAGCCGCCGCTGCCCTCGCCTCAGCTGCCACCAAGGCCAAGCACCTGGcagcagtggaggagaggaagatcaAGTCTCTGGTGGCTCTGCTGGTGGAGACTCAGATGAAGAAGCTGGAGATCAAGCTCAGACACTTTGAGGAGCTGGAGACCATCATGGACCGAGAGAAAGAGGCTttggaGTTGCAGAGGCAGCAGCTGCTGACGGAGCGCCAGGCCTTCCACATGGAGCAGCTGAAGTATGCTGAGATGAAGGCCCGCCAGCAGATGGAGCAGCAGCAGGCCAACACAGTGGCCCAGGGCCCCGCACCCCACCATGGTCCCCCAGGGCCAGGCATGCACCACGGACCCTCCCACCACGGACCCCCTCCCGCCATGCACTCCGGACACGGCCCTCCCGGACCCGGGTTCCACCCCATGGGTCCCCACCACCCGCAACAGACcgGACCAATGGGAGGGCCCGGTCAACCCATGCCAGGACGCATGATGCCTGGCGGCCCCCCCACTGGCAGCATGCCTCCCATGATGGGTCCCCGCCACCCTGGAGCCCCCAACGGCATGTACCCTGGCCCCTCGCCTGTACAGCCTGATGGTATGCCCCCAGCATCTGTGGGACCTCAAGCGGCAGCCCCAGCACGAGTTGCTGACAGCTAAGATCCCTGcccccaaacaaacacacaccaacacacactcacctcTTATAAATCCTCAGCTCATTGATGGCCTTGCTACTGGCTGAGTGTTCTCTC

Function

GO: NA

KEGG:

id description
K11649 SMARCC; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152558 lncRNA upstream 428 31912956 ~ 31913253 (+) True G132407
TU152553 lncRNA upstream 9992 31903040 ~ 31903689 (+) True G132402
TU152491 lncRNA upstream 34475 31834170 ~ 31879206 (+) False G132342
TU152429 lncRNA upstream 66368 31763180 ~ 31847313 (+) True G132311
TU152083 lncRNA upstream 216601 31696846 ~ 31697080 (+) True G132014
TU152564 lncRNA downstream 2308 31933957 ~ 31934251 (+) True G132413
TU152567 lncRNA downstream 5475 31937124 ~ 31937342 (+) True G132416
TU152568 lncRNA downstream 7546 31939195 ~ 31939419 (+) True G132417
TU152590 lncRNA downstream 45311 31976960 ~ 31977176 (+) True G132439
TU152592 lncRNA downstream 47939 31979588 ~ 31979690 (+) True G132441
XM_036945737.1 mRNA upstream 56086 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA upstream 56086 31841739 ~ 31857595 (+) True LOC110534719
XM_036945732.1 mRNA upstream 289667 31589474 ~ 31624014 (+) False LOC110486995
XM_036945742.1 mRNA downstream 10317 31941966 ~ 31974601 (+) False LOC110487045
XM_036945749.1 mRNA downstream 10431 31942080 ~ 31973874 (+) False LOC110487045
XM_036945752.1 mRNA downstream 10432 31942081 ~ 31973874 (+) False LOC110487045
XM_036945743.1 mRNA downstream 10432 31942081 ~ 31974601 (+) False LOC110487045
XM_036945744.1 mRNA downstream 10433 31942082 ~ 31974601 (+) False LOC110487045
TU152486 other upstream 26109 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 30608 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 547359 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 550468 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 620647 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 1235789 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1564805 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1882384 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 2030768 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2756306 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile