RNA id: XM_036945749.1


Basic Information

Item Value
RNA id XM_036945749.1
length 2156
RNA type mRNA
GC content 0.58
exon number 7
gene id LOC110487045
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31941966 ~ 31974601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAACAATCCTTTCCCCTTCCCATATGGTGAGAGCAGTGCCGAAAGCATCACATTCCGCGGAGCGTTGCCTGTCGTCCTATGGTGAAGTGCCATCGCTCTAATCAAAAACAAACGGAGCCGCAGCTTTCGCTTGCGCTCAACTCAGCTCCAGTACGGAACGTCCATCCTTGGCTGTGCGAGGTCTCCGTCTGGCCGATATTCGGTGGCGACGGGGCCTTGAACGATTGAACTGTGGCTAATTGAAGAAGCGGGAGAAGTAAATACTAGCACACCACTCAAGACGAAGTTACTATGGGGAAGTGCAGGGAGGCGGGAGTCTAACGTGGATAGGgggcacaaatcaaatcaaaagatTTACAATTCGGATTATTTATATTTTGAACACTTCATTTTCAGAGGGATTTTCATCAGATTTTCTGGCCATTATCACACGCAGGAATGAACGGAAAGGAAGCGAGGTTTTGCACGGGATGCTGGAGGCAAATGATGCTGTCAATCATTCTGGTTCTACACTTGATTCCCCTCTTTGTACATGGGAACACTCTGAGGGCCAATGTCCCTGAGTTGGACACCACAGCCAACGTGACATCCCTGCCCAGTAAGGTCGAGGAAGCGGCCAAAGTGAATGATGTTGTTATCGAGGTGACCGGGGTCAGCGCCTCAGTCAGCCCCGTCGTCACGGTGACCCAGAGGGCCGGCCGCATGCCCCGCTCCAAAGAGGAGCAGGGCAGCGGCATGCTGGGAGAAGGGGTGTTGCCAGccgaggaggaggtggtggcccCGCCCAGGATCAGCCCTGACTCAGCAGAGACAGAGCTCCTTCTGCTTAGCAACCCCCGTGGcacggaggaggaagaggatgaagaggagcaCACCGACCCACCGTGGCTGAACGCCAGAGACAACGTCTTCGACCTGGACCGGCACTTCCGAGAAGGAGTAGCCAATCTGGCCACCACCACTGCCCCTCCCCCTGCCGCCGCTAACCCCTCTCGCCCGGACGTCCTCACCGTGGACTTCTTCGACCCCGCCTCTCGCGGCCGCGGCCTGGACCTAGCCccgccctctccctcctctttggCCCACGAGCTCCAGGGCGGCGACCCCACTTCCTGGGAGATGCCAGACAGCTACGACCCCTTCACGCCGTACGAGGAGGGTGCATCGCCCACCCCTGATGAGTACTCCTACGGCACCACTACTGATACCTTGGATGGGGATGACGACTTGAGGCTAACTGCCGAGCCTCCATCGCGCTCCAGGCCCAGGGCTCCCCCAGGTTCCGGCTCCTTCACCCCAGACAAGAGGCTGCCCAGTGGGGGTGCTGCTGCTGCACCAGAGGGCCCTGCAGCAGCCCCTCCAGCGTTACCCGTGGATGGCTCAGACGGAGCCGGTGGCTGCCGCCAGGGCTACGTGAAGCAGAATGGAACCTGCCGCTCCCCCTgcgacacactgcccagctactgcttCAACGGAGGCCAGTGCTACCTACTGGATGAAATGGGGGTCTTTTGCAGGTGTAATGTCCAGGACTACATCTGGCACAAGGGTTCCCGCTGTGagtcggtggtgacagagttccAGGTGCTGTGTCTGACCATCGGGGCGTCGGCCCTCATGGTGCTGCTGCTCTTCATGATCACCGTCTGCTTCGCCAAGAAGCTCCACGTGCTCAAGACCGAGAACAGCAAGCTGCGCAAACGCAGCAGTAAGTACCGGCCTCCATCGGAGCAGCACAATGATAATTTCTCCCTGTCCACCATCGCTGAGGGCTCCCACCCAAATGTAAGGAAACTGTGCGACACCCCTCCTAACGTCCCTCATGCCCGTGCTTTGGCTTACTATGATAACATTATCTGTCAGaaaaccATGAGCAGATACACCTGGGAGTGTAAGACCAAAGAGGAGCCCGACAGTGAGTTTCACGCTGACGGAAGGAAAGATGGCCCCTATCCTGTAACCATGGAAGTGACGTATCCCCACGTCCTGCCCGAAGTTACTATCTAGGCCATCAGCCAATGGGATGATCCTAATGCCCAGAACAAGCTGGAGGACCCCGTGAAGGCCCCGGTGCCCAAGGAGGACGACTCCCTGAACATCCACAACTCCCTGACCCCCAAACACGAGAACCACAAGGTACTGGGCGAGGAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152568 lncRNA upstream 2661 31939195 ~ 31939419 (+) True G132417
TU152567 lncRNA upstream 4738 31937124 ~ 31937342 (+) True G132416
TU152564 lncRNA upstream 7829 31933957 ~ 31934251 (+) True G132413
TU152558 lncRNA upstream 28827 31912956 ~ 31913253 (+) True G132407
TU152553 lncRNA upstream 38391 31903040 ~ 31903689 (+) True G132402
TU152590 lncRNA downstream 3086 31976960 ~ 31977176 (+) True G132439
TU152592 lncRNA downstream 5714 31979588 ~ 31979690 (+) True G132441
TU152593 lncRNA downstream 7495 31981369 ~ 31981617 (+) True G132442
TU152594 lncRNA downstream 8001 31981875 ~ 31982285 (+) True G132443
TU152602 lncRNA downstream 60680 32034554 ~ 32034921 (+) True G132451
XM_036945739.1 mRNA upstream 8926 31913680 ~ 31933154 (+) False LOC110487037
XM_036945740.1 mRNA upstream 10431 31913680 ~ 31931649 (+) False LOC110487037
XM_036945741.1 mRNA upstream 10431 31913681 ~ 31931649 (+) True LOC110487037
XM_036945737.1 mRNA upstream 84485 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA upstream 84485 31841739 ~ 31857595 (+) True LOC110534719
LOC110487089 mRNA downstream 11485 31985359 ~ 31987549 (+) True LOC110487089
XM_036945756.1 mRNA downstream 13810 31987684 ~ 32027099 (+) False LOC110534747
XM_036945754.1 mRNA downstream 21677 31995551 ~ 32027099 (+) False LOC110534747
XM_036945755.1 mRNA downstream 23144 31997018 ~ 32027099 (+) True LOC110534747
XM_021558973.2 mRNA downstream 82645 32056519 ~ 32063386 (+) False LOC110487062
TU152486 other upstream 54508 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 59007 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 575758 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 578867 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 649046 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 1193564 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1522580 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1840159 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1988543 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2714081 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile