RNA id: XM_036945744.1


Basic Information

Item Value
RNA id XM_036945744.1
length 2722
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110487045
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31941966 ~ 31974601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAATCCTTTCCCCTTCCCATATGGTGAGAGCAGTGCCGAAAGCATCACATTCCGCGGAGCGTTGCCTGTCGTCCTATGGTGAAGTGCCATCGCTCTAATCAAAAACAAACGGAGCCGCAGCTTTCGCTTGCGCTCAACTCAGCTCCAGTACGGAACGTCCATCCTTGGCTGTGCGAGGTCTCCGTCTGGCCGATATTCGGTGGCGACGGGGCCTTGAACGATTGAACTGTGGCTAATTGAAGAAGCGGGAGAAGTAAATACTAGCACACCACTCAAGACGAAGTTACTATGGGGAAGTGCAGGGAGGCGGGAGTCTAACGTGGATAGGgggcacaaatcaaatcaaaagatTTACAATTCGGATTATTTATATTTTGAACACTTCATTTTCAGAGGGATTTTCATCAGATTTTCTGGCCATTATCACACGCAGGAATGAACGGAAAGGAAGCGAGGTTTTGCACGGGATGCTGGAGGCAAATGATGCTGTCAATCATTCTGGTTCTACACTTGATTCCCCTCTTTGTACATGGGAACACTCTGAGGGCCAATGTCCCTGAGTTGGACACCACAGCCAACGTGACATCCCTGCCCAGTAAGGTCGAGGAAGCGGCCAAAGTGAATGATGTTGTTATCGAGGTGACCGGGGTCAGCGCCTCAGTCAGCCCCGTCGTCACGGTGACCCAGAGGGCCGGCCGCATGCCCCGCTCCAAAGAGGAGCAGGGCAGCGGCATGCTGGGAGAAGGGGTGTTGCCAGccgaggaggaggtggtggcccCGCCCAGGATCAGCCCTGACTCAGCAGAGACAGAGCTCCTTCTGCTTAGCAACCCCCGTGGcacggaggaggaagaggatgaagaggagcaCACCGACCCACCGTGGCTGAACGCCAGAGACAACGTCTTCGACCTGGACCGGCACTTCCGAGAAGGAGTAGCCAATCTGGCCACCACCACTGCCCCTCCCCCTGCCGCCGCTAACCCCTCTCGCCCGGACGTCCTCACCGTGGACTTCTTCGACCCCGCCTCTCGCGGCCGCGGCCTGGACCTAGCCccgccctctccctcctctttggCCCACGAGCTCCAGGGCGGCGACCCCACTTCCTGGGAGATGCCAGACAGCTACGACCCCTTCACGCCGTACGAGGAGGGTGCATCGCCCACCCCTGATGAGTACTCCTACGGCACCACTACTGATACCTTGGATGGGGATGACGACTTGAGGCTAACTGCCGAGCCTCCATCGCGCTCCAGGCCCAGGGCTCCCCCAGGTTCCGGCTCCTTCACCCCAGACAAGAGGCTGCCCAGTGGGGGTGCTGCTGCTGCACCAGAGGGCCCTGCAGCAGCCCCTCCAGCGTTACCCGTGGATGGCTCAGACGGAGCCGGTGGCTGCCGCCAGGGCTACGTGAAGCAGAATGGAACCTGCCGCTCCCCCTgcgacacactgcccagctactgcttCAACGGAGGCCAGTGCTACCTACTGGATGAAATGGGGGTCTTTTGCAGGTGTAATGTCCAGGACTACATCTGGCACAAGGGTTCCCGCTGTGagtcggtggtgacagagttccAGGTGCTGTGTCTGACCATCGGGGCGTCGGCCCTCATGGTGCTGCTGCTCTTCATGATCACCGTCTGCTTCGCCAAGAAGCTCCACGTGCTCAAGACCGAGAACAGCAAGCTGCGCAAACGCAGCAGTAAGTACCGGCCTCCATCGGAGCAGCACAATGATAATTTCTCCCTGTCCACCATCGCTGAGGGCTCCCACCCAAATGTAAGGAAACTGTGCGACACCCCTCCTAACGTCCCTCATGCCCGTGCTTTGGCTTACTATGATAACATTATCTGTCAGGATGATCCTAATGCCCAGAACAAGCTGGAGGACCCCGTGAAGGCCCCGGTGCCCAAGGAGGACGACTCCCTGAACATCCACAACTCCCTGACCCCCAAACACGAGAACCACAAGGTACTGGGCGAGGAGAACTCCTCTGAGGTAAACTCACTGCAGAACAACATGATGTAGAAGCCTGGGTCGGGATGAGAGCTCCAGTCCTGCTCTCTATCCCAGCCACCACGCCTACAACTGCTACCACCAGCCAACCACCGTCTACAACACGGCAACACTGCCACCAAGCGGGCAACGCcgctggaaaaaaaaaaaaaaaaacgcaccACCCCAGCTGAAACTCCTCCCCGACCTGCCACCGCCTATAGCGACCCCTTACGCCCAATCACGCTCCCCCGCCTCGCTGCCCTGCCCCTTCGTTGCTGTCACTCTGCTCCCCCTTACCCCCTGcccgcacgcacatacacacaccagaaaacacaaacagacacaccaaaacacacaaacacacatatatacaaacacacactcacatatacactcATAATTCCCCTGCCTGCATTGGTGtattttgtaaaaataaaaaaatcatatGGAGTTTAAAAAAGAAGTTAagcattgtaaaaaaatataaaagttACTGAGAGGTTTCGATGTTTGTCTGACTAATTAAGTGAGTATGTATAAATATATGGAAAAAATGCTTGGATTGATATAAAAGAAACAACACAATGTGTCTTCGTTTTCATTGATGTGATTTCTAATCCTTTGATGTACTTGTTTTATTTTGTACTTTTTTGGGAATACAGACTTCAAAACAGAGAACAAAATCTAACAATTGTTGAAATAAACCTTTTTAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152568 lncRNA upstream 2663 31939195 ~ 31939419 (+) True G132417
TU152567 lncRNA upstream 4740 31937124 ~ 31937342 (+) True G132416
TU152564 lncRNA upstream 7831 31933957 ~ 31934251 (+) True G132413
TU152558 lncRNA upstream 28829 31912956 ~ 31913253 (+) True G132407
TU152553 lncRNA upstream 38393 31903040 ~ 31903689 (+) True G132402
TU152590 lncRNA downstream 2359 31976960 ~ 31977176 (+) True G132439
TU152592 lncRNA downstream 4987 31979588 ~ 31979690 (+) True G132441
TU152593 lncRNA downstream 6768 31981369 ~ 31981617 (+) True G132442
TU152594 lncRNA downstream 7274 31981875 ~ 31982285 (+) True G132443
TU152602 lncRNA downstream 59953 32034554 ~ 32034921 (+) True G132451
XM_036945739.1 mRNA upstream 8928 31913680 ~ 31933154 (+) False LOC110487037
XM_036945740.1 mRNA upstream 10433 31913680 ~ 31931649 (+) False LOC110487037
XM_036945741.1 mRNA upstream 10433 31913681 ~ 31931649 (+) True LOC110487037
XM_036945737.1 mRNA upstream 84487 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA upstream 84487 31841739 ~ 31857595 (+) True LOC110534719
LOC110487089 mRNA downstream 10758 31985359 ~ 31987549 (+) True LOC110487089
XM_036945756.1 mRNA downstream 13083 31987684 ~ 32027099 (+) False LOC110534747
XM_036945754.1 mRNA downstream 20950 31995551 ~ 32027099 (+) False LOC110534747
XM_036945755.1 mRNA downstream 22417 31997018 ~ 32027099 (+) True LOC110534747
XM_021558973.2 mRNA downstream 81918 32056519 ~ 32063386 (+) False LOC110487062
TU152486 other upstream 54510 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 59009 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 575760 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 578869 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 649048 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 1192837 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1521853 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1839432 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1987816 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2713354 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile