RNA id: XR_002468177.2


Basic Information

Item Value
RNA id XR_002468177.2
length 3545
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC110487099
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32068818 ~ 32075136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCACATTTTACAATTATCTAACAATAAGGTTGTGGAAGAACCAATTATTCGTACGTCTCAAACAGAAGCTTGTCAATTTGCTATGtcatgaaacacacagacagaaccacaCCTTGCTTTCTCTCGTGCACTTACACCTGTAAGGATGGATTACTATGGCAACAGGTTGCCACTGGCAACGAGATAGCCTACTACATCACTTTGGTGGGAGTGAGTGAGGGGGACGACAAAAGCTCTGGGTGGATGAGCAGGCAGAAATATTAACAGCTTGAAAGAAAGAGATTGAAAATGGAGAGCAGGGTATGTTTAGATaaaatgcttgtttttgtttttctcgCAAAATACTGAAAAATATGTGGCTATTCATAAATGTATTGCCTTTGGTGCGCGCGCTGACGGAATTTCCCGCGCTCTTCTGATACAACAGGAGCCACCAGTGCTCCAGTATCTTACCACATCTGAAAGTGATTATCTGAGGAAGGCAGGAGGAGCAGTGACGAAATGGATGAGGGGTCCAGGATGGCTGAGGGGAAGGCTGCCTTTGTcttcgtcctcctcctcttcatcgccCTGGCCTTGCTCATCGTGCGCTGCTTCCGCATCCTGCTGGACCCATACCGCAGCATGCCCTCCTCCAACTGGACAGACCACACGGAGAAGGACACGTTTGACTACCGCATTGTCTAAGGAGGACCTAAGGAGCTCCCTCGACACTGTATTGCAGTGTCCTTCTCCGTGTGGAGAAGGAGCTCCCTTGACACTGAAGCACTGTCAAATATTGCAATGCTCGAGGAGCAACTTTGTTTATCCATTTTGCCCAAGGACCACATGCTGTATGACTGCTGGTGCCAAACCACCAGTGGCACCTTTGGATTAGAAGCAGCCTTCGAGCATGCATCACCTAAAACCTTTCTTTGTCTGCTCTATTGTAACATGTTGTATCAATTGCTTCACCAATTACTGCAGTCATAAGCAGTAATTGCCAGCCCTTATTACCCTAATGACAACACATACGAGTGATTCCATATGAAACCAGGACAAAAAAGGACATAATTTTGCagataaaaaaaaagattttatcCATAGAATGGTCCTTTGTAAGAAAgattgttgacatatatttgacatatatttgacatttgtatctaaaagcataattgagaaataatttATCTAAGTTGTCATATTTATGACATTTTGGCCTTTCCCAGGAGTCCTTAAATGTGCATGATGTGCAATGATGCAAGTAaaaggagggctgtgattggttacatTGCCTGCTGTGCCAATTTCTCAATATGAAACGGTCAATAAAATTAAAACTAGCAGAGATCCCACCATGGAACTTTGATATGCCCCTAGagtatattatgttcaacaatatattgaaacattttcaatattcatgtttgtatttttaaatattaatatattatataaatattatataatataaatattataatattatataaatatatatgaatgtaCAAAAATGTTATTGAAATCATAATACTACTCATATTACAGAGCAAGCGTTAAAGTTTAATATGACACCAATTTTAGCTTTTTAGCATCTACAGAGGAAAGATTGTGGAGTCTTACAGGAGGCCTGGGTAAGGCAAAAATGCCATAATATGGCAACTTTGATTTAGTAATTCTCAGTTATGCTTTCCTCCAAAGGACCATTCTATGGATTAAATGTTGCGAAAATCCCTAAATCATGGTATTTTATTTGTTCTGGTTTCATATGGAATCACTTATAAGGAACATCTTCTACCAAATGGCCAACACTTCTACCAAATGCCTAACACTATAGGCATCATCTAAGGTACCTGCTATCATATCTAACTCCCGAAGACACACTCCAGGCTAACTCGTTGCCACTACTATTGCATTATTTCACTACCCCATCCCCTTAACCCTTTACTGCGGTGGGCTAAActagggtcacacagtgtttcttagtagtcttaaacaaatctactcaGAAGAAATGTATACACCTTAtgcacatggttatgggtttaaaaaaataagacaaTTTTACCAAGTCAGATAtatagttgaaatgtattacattttgagtttgcatcccaatattacattttatatacatcacagaatacTGAAATATAACACAACTGTTTGACATAGCAACACTggatgtttattaattatgaaactatgagaaatattaataacattccacccatgagaccacttttggtcatttgactgcaggaaagggctacaggtGCTCTATGCAACAGTTCCTCCTGCAAATAGGCCTACATTTCAATTGTGTACTTGTAGTAGTAAAGGAATAAAACTCCATGTAAGAACAAGGAAAACATTTGAATGCTGCTTGAAGCTATAAAGTTGCTTGTTTGCGGCAAGGTCCTCAGTATATAAACAGTGTATCCTGTGGAATTTTTGACTTCAATTGTCCACTTTGGCCAAGGTACAAAATGCACAAACAATCAATCAAGCATCGCTCAAACAAAAATACACTTACACAGAAAAAACAAATGTAGTTACATTTATGCCAACCAGCGCCTTGTGCACTCACAAAGACCCTGACCCTCATTGAGCTGGTTGATACTTTTTGAAATTGGAAGAGAGATATTTCCTTTAACATCAGCCAGCCTATAACATAACATTGATATCCATATCTTTGTCACCCAGGTTCTTTGTTTTCTTGCCATCGTGGAAAGAGAGGTAGACAATGTTTCAAAGTATCCTTTAAAGAGACTTCATTGTTTTTCGGGAGGCTTCAATGGGCCTTAGATGTTTGATGTCAGCAGTGGGATAAGTGTTAACTATTCAATGTCTGCAATCAAAAAAATGACAAATCACTTTTAATGTAAAGGATCCAGAGTCATAAATCTAAATGACCAAATGAGGTTTATTGAAATGTTTACTGTGCCGTAACTTGTGCCTAATTATGAACATCTGGATGAGTCGAAAGATTCATTCCAGTAGTTCTGTCGTAGATAACATCTTGCTATAGTTCTATGTAATATCCTTTTCATATCTGAAATAAAATAAAGCATATCACTGCCTACAGATGGCATGTTAGCAGTGTGCTACATCTGAACAGATTATCACACCTTGGACGATCCCTTTATGGACAATGTCTGTGGCTCTTTCTTTGGGCAACTACTTAACTGTACGCCTTATAGAGTAGCATGTTTACAGATAGTCAATAGATGACAGAAAAATATGTTATGCACTTCAAGCAGATGTCATACACCTACCAAATGAGTGTGCTTTCACACTTTGACATGTGATGTTCTTGTGATATACTGTGGCCTTTTCCTATCACAATGTATCAGTTTAGTGGTACCTTTCTGTGCACAAGTGTCTTTGCATGTTTATGCAAAGTTTCCCCTCCAAGCATGTTGGGTGCTTTACGCATGTTGATGCTGCTGTTATTTagttggtacagtacagtattcacTGTCAACGTTTGAGCCTTCTTTTGAACATGTATTATGCTTGCCTTGAGCCTCTTTCCTTTCATAATAAAAGTAATTACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152794 lncRNA downstream 23310 31998807 ~ 32045508 (-) True G132631
TU152777 lncRNA downstream 83446 31985139 ~ 31985372 (-) True G132617
TU152775 lncRNA downstream 85978 31982515 ~ 31982840 (-) True G132615
TU152774 lncRNA downstream 86730 31981870 ~ 31982088 (-) True G132614
TU152773 lncRNA downstream 87863 31980450 ~ 31980955 (-) True G132613
TU153241 lncRNA upstream 231806 32306942 ~ 32307262 (-) True G133048
TU153270 lncRNA upstream 262874 32338010 ~ 32338999 (-) True G133077
TU153281 lncRNA upstream 275086 32350222 ~ 32350448 (-) True G133085
TU153256 lncRNA upstream 291553 32366689 ~ 32367374 (-) True G133063
TU153295 lncRNA upstream 323094 32398230 ~ 32399418 (-) True G133099
XM_036945753.1 mRNA downstream 12580 32027226 ~ 32056238 (-) True LOC110487053
LOC110534740 mRNA downstream 162688 31897466 ~ 31906130 (-) True LOC110534740
LOC110534727 mRNA downstream 175913 31889030 ~ 31892905 (-) True LOC110534727
XM_036990495.1 mRNA downstream 185757 31857694 ~ 31883061 (-) True LOC100136303
XM_021617426.2 mRNA downstream 185758 31857694 ~ 31883060 (-) False LOC100136303
XM_036945766.1 mRNA upstream 20395 32095531 ~ 32171431 (-) False LOC110487106
XM_021559031.2 mRNA upstream 20395 32095531 ~ 32218170 (-) False LOC110487106
XM_036945763.1 mRNA upstream 20395 32095531 ~ 32218170 (-) False LOC110487106
XM_036945765.1 mRNA upstream 20395 32095531 ~ 32218170 (-) False LOC110487106
XM_036945769.1 mRNA upstream 20395 32095531 ~ 32218170 (-) True LOC110487106
TU152378 other downstream 420023 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 525809 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 870006 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 873098 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 663693 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 663693 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 673072 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1137528 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1790352 33865488 ~ 33865937 (-) True G134668

Expression Profile