RNA id: XM_021559031.2


Basic Information

Item Value
RNA id XM_021559031.2
length 5513
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110487106
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32095531 ~ 32218170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTGTCCCTCCCCTTGTCATTGGACCGACTGCCTGCCAATTCAACACACTAGGGCGTGTATTATCCTATGCTGCTTTTCGCTGGGTGAGGTATGTTGTGATTGCAGTCCAGCTCGAGCGTGCGTGGGTCTCTGTCATGACAAGGGGCGCTCTTTCGCAGCTTTCGCGCTCTGGGAATACAAGCCTTTTTGGAAAAAATAACTCATCCCGTCTTTACGCTTCTGTAACACTGGTCTCTGTCCTGCTAGAATCAAAGTATTGTCAACGAAACCAGATAGCCAAAACGAAAGAAAAAGATTGTGGATGTCTTCACTCGGGGTGACGATCCTAACCAGCTAGTGCCAATCATCTATCCGTGTCAGCTGGCTGAATCTCTGCAGTCAAATTTGTCGAAAGTTAAGgAAGTTTGCTGAGGATTGCAAAACTAATTGTGAAAATATCTGAGGGGGGTTTCAACCCCCTGACCCTCCCCCAACTGCACAACCCCTCCGTACTTATCGGATCGGACCCTCTGAATTCTTCACCTCTGTTGGGAGGAACCAAAGATCGACTGGGCCATTTGACGGTGTAACCAATAACCATCCATCTGTACTGATACAGAAAgTGGTGGTGTGCCCGCTGTTGGCCATGCTGTTCTGGTGAGGTGTGGTAAACCCCTGCCAACATGAGGCTGGTGCCCGGGTCGCCTCGGCCCCTCCCCCTTCTGGCGGTGGTCCTGGCTCTAGCCCTCACAGCACTCTTACCTCACCTGGCCATGGGAGTCACACCCTTCCCCCAGGACCTGGAGCCAATCAGCATTGGGGGGAGAGAACACTCCTACCTGTACCCAAGCTTCCAGGGCCTCATGTCAGACAACGATACAGTACGACTGGGCCTGGACTTCCAGAGGATGCTCCGGATCAACCACATGCTCTACATCGCAGCCAGGGATCATGTGTTTGCTGTCAGTCTCAGCGCCTCCTCTGAGCAGATCGTCCCACAACAGAAATTGACTTGGAAGACAAAGGATGTGGATAAATGCACAGTGAGGGGGAAGAACAGCGATGAGTGCTACAACTACATCAAAGTTCTGGTCCCACGCAACGACGAGACGCTATTTGCCTGCGGTACCAACGCCTTTAACCCCACCTGCCGCAACTACAAGatgTCCACACTGGAACAGGACGGTGAGGAAGTGGTGGGTCAGGCCCGCTGTCCCTTTGAGTCTCGCCAATCCAACGTCGGCCTCTTCGCTGGTGGCGATTTCTACTCGGCCACCATGACAGACTTCCTGGCGAGTGATGCGGTAATTTACCGTAGTCTGGGAGAGAGCAGCCCGGTGCTTCGTACCGTGAAGTACGACTCCAAATGGCTACGAGAGCCTCATTTCCTCCATGCCATTGAGTACGGGAACTATGTGTACTTCTTCTTCAGTGAGATTGCTGTGGAGTATACCACACTTGGCAAGGTTGTGTTCTCCAGAGTGGCTCGTGTATGTAAGAACGACAACGGAGGTTCTCCCAGGGTTCTAGAGCGTTACTGGACGTCGTTCCTCAAAGCGAGGCTCAACTGCTCGGTGCCGGGCGATTCCTTCTTCTACTTTGACGTTCTGCAGTCGCTGACCAACGTGCTGCAGATCAATCTCAGACCAGCCGTGCTGGGGGTCTTCACTACACAGGCcaacagTATCACAGGCTCAGCAGTATGTGCATTCTACATGGACGACATTGAGAAGGCTTTCAACGGGAAGTTCAAGGAGCAGAGGAACAGTGAGTCAGCCTGGACACCCGTGCCTGAGGAGCAGGTACCCAAACCCAGACCAGGCTGCTGTGCCGGCGACGGCTCTGCTGCTGCCTACAAGTCGTCCACGACCTTCCCCGACGACACCCTGACCTTCATCAAGAACCACCCCCTGATGGACGAGGCTGTTCCCTCCGTCAACCACCGGCCCTACTTCACACGCACAACCAGCAGGTTCAAGTTGACCCAGCTAGCAGTGGATACGTCAGCTGGGCCCTATAAGAACCACACGGTGCTGTTCCTGGGGAGCGAGGACGGCAGGGTACTGAAGATCCTGGCCAGCACCCAGCTCAACGCCTCCTTCAGCACACAGCTACTGGAGGACATCGATGTCTACAACCCCACCAAATGTAACGTCCGCGGAGAGGACAGACGGGTTCTGGGATTGGAGCTGGACAGGGAACATCACGCTCTGTTTGTGGCCTTCTCCAGCTGTGTGGTCCGAGTACCTCTGAGCCGCTGCAATGACTACGGCTCCTGCAAGAAgAGCTGTCTGTCCTCGAGGGACCCTTACTGCGTGTGGCAGAGGACTGGGAGCTGTGTCACAGTGGTGCCCAGATTCAGgGGCGGATTTGAGCAGGATGTGGAGAACGGCTACCCTCACTACCCCGACAGCTGCCACGACGTCCTGGCGACCACACGCAAGCAAAACACTCTTGCTGATTCAGCATATGGGAAGACCACACCCACAACAACCGCCAGCACAACCAATCAGGTCGCCCCATTCCCTAAGGTGGCAGGTGACTCTGAAAGAGGTACAGGTCCTGATGGCAGTCCTCCAGTCCCAGTTGGGGACCAGGGGTCACCTGACTCGGAAGCAATCAGTGTGGAGATGGAGGGTGTCCGACGGCCTCCCGAGATGGAGAAGACCAACCACAGTGTCCACTACACCCTGCTGATTGCCTGTGTGCTGGTGGCTTTTGTCCTTGGAGCCTTCCTCTCAGGCTTTCTGGTCTCCTGCTACTGCAACCACACTGGCCACAAGACCAAGAGGCTGGCCAAGGACCCAGAGGCCCCCATTCCTCACGCCCTGTCCCTACGCAGCCTGGCCAAGCTCAATGGCCTGCTGGAATGCCAGAACAAGGAGGATAAGATGGAGGTGTCCTCGCCCAAGCTCTACAACTCCTTCTTCCAGAACGGGAAGGAGCATCATCAAGGAGCACCCAGACGGAACGGTGGTCACCACCCAGGGATGTCAATGGGAGACCAGGTCCACCCCCATCACCTACACCACTCTTCGGAGCTCTCGGGTCTGCCCACCCCAGACTCCACCCCTGAACTGCCCATCAAGAACATGAAGGCTTTCAAGAACCAGTGGGAGAAGAACCAGAACTGCAACAATGCCAAGGAGCCCAAGTCCCACAACATGGGACAAGGCTCCAGGCCCAGCTCAGGCCAGCTCCACCAGCAGATCTACCCCTACTCTCACAGTTTCTCCAATGGGCAAGCTCTGGCCAATGGGCATGCCTTAGTCGGTGGACCCCAGCACCTGGAGGAACGCAAGATCCACAATACCGAGCGCATGTTGGTCCAGCAGCCTTACCCCTGCTACTCACAGAAGGTGATGGAGGTCACGTCGCTGGATGAGCTGCTCAAACACATCCACGAGGCCAACGCCAGCAAGAACGCCCAGGTCATGACCTCATCCGGCCTGTCAGCCAGCGGCGGGTGCCATGGGGGTCAACTAGCCTTTGCCAACCGTGTCCAGCCGCACATCCCCGAGACGGAGTCTGCGCCCTACTACAGCTCATCCACCCTGCCCAGAGACAGCTTGTCCCGCCGCATGGACGTACCTCCAGACATGCCCCATCACCACCAGTCCACCCTGGAGCGGAGACACTCTTCCCAGAGACACTCACTGATTACCGCTGCCACTAAGATTGCCAacggaggaggtggtggagggatgGTCCACCGACAGCAAAGCTTCAGCCAGCGTAACGGCCACCAGCACCAACCACCCCCTATGCTGGCTCGAATGAACTCCACCGGCAGCGCCTGCGAGATCCACTACCCGCTCATCCCCAATGGGTACCTGACACGCCAGCAGAGCTACAACGGAGAGCAACAGGAGGATACCGGAGGATACCTCCACCGGGGGGCCATAGTCCGCCGGACCACCTCCCTCAAACCCGATGTCCCTCCCAAACCCCTCTTCATCCCTGCCTCCTCTCCCGTCAACCAACAGGGAAACTTCAACTactgaggagaaagaggagaggagaacaggacaagAGTGACTGTGCCTCGTCCTCTCCTCTCAATGGGTGAAAAGTGAAAGACCTTTATGAGAAGACGTGCCCTGGATTATGTGGCAGCCATTCTTGCTGTCGACAAACCTCAAACAAATTTATTTCCCCCTTTTTGTCCAATGAATATCTTTGTACCATATTGGTATTGCTCAGCTACTTGCTTATAGAAGGTGAGGGACTGGGGTTGGTGAAACGCGACCCCCTTATAGTATGCTGCCAATGTCCTCAGTGTGGATTTACCATGCAATTTAGTTATGGAAGGGTTTGCCATCAAACATCGGACAGCTTAAGATTCAATCTAGAGCTTCTTGCGATGCCTATGAAACTTGCTTTTGCTTACCTTTTTCTTATGTAGTGTTGACAAAAAGTCCTGATCCCCCTAACGTGTTTctatatatgcatgtgtgtgtatatatatgtgtgttttaTATCTACAccgtatatgtatacatatacatatgcaGTATATGTATCCTGTGGAGCGACATCAACAAAACTCCTTTTAAAGGTAGCTCTGTCTTTTTGCCTTACTTTGAAACTGAACCCATTATGTTGAATTACATTACTGGTTGGTGTTTGGCATCTCAAATATAAGTTCTTGAAATGAGGCAAGGCCCTGCCTGCCCCTGTTTCAGCATGGTTAGTATGTGGACTAGGGGAATAAGTAATAATTTACCATATTAACACGTTCATGGTGAATTTGCTACTCACATTCAAAAAGAGAGCCACGCTGGTGGATACTGACAAGCAAAGGAAACTACTCAAAGCAACTATGCTAGGCGTTTCTCTTTTTTGAAAATGGATACCAAGGCCTGAGAAGCCGATGAAAGGCTTTAATACAGCGGGTCTATGAAGTAGGGCCTACTACAATTCCTAAAGAATGTTTTTATCACATTGGTGCTTAGTTGATCCTCATGAATTTGAATATAATTATCATGTATCATACCCAAAGAGGACCAGACACTCAACCCCCAATGAATCAGGATCAAGATCAGACCATCCACCCCCAaaaaacacaacatggtacagACAGCAgttattataattattaacttTGTGGCTATTGGTTGTAAATAAAGGAATAATACTAGCCAAATGTTAATTGTATGTGTAAATGTGTGCCTTATTTAATATAGTATGTGGTATGGGGTAGGGGTAAATGCAAGGCGCCAAGATGCTATATAATAGGtgttagattattattattttttatggtCGTCGGAATGTGTCATATCTATTGTAGATTTGTATTTCTAACTAGGGTTTTTGATATCCCTGAACTGTGAGCCTGCCAGCCCTGGCATAGCGACTACCACAGCTTGATGCTGCATCTTCTTTGTTTGCCTCCTTTTCATGTGTTTTCACTGGGTTGGCTTTTTCCCTGATTGCTAACTTTACCTTTTGATTGTTTGTAGCATAGCAGGCTACTCAATAGATTAAAAGGGGGGACATCAGTCCCTTAGATGTTAAGATTATTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152794 lncRNA downstream 50023 31998807 ~ 32045508 (-) True G132631
TU152777 lncRNA downstream 110159 31985139 ~ 31985372 (-) True G132617
TU152775 lncRNA downstream 112691 31982515 ~ 31982840 (-) True G132615
TU152774 lncRNA downstream 113443 31981870 ~ 31982088 (-) True G132614
TU152773 lncRNA downstream 114576 31980450 ~ 31980955 (-) True G132613
TU153241 lncRNA upstream 88772 32306942 ~ 32307262 (-) True G133048
TU153270 lncRNA upstream 119840 32338010 ~ 32338999 (-) True G133077
TU153281 lncRNA upstream 132052 32350222 ~ 32350448 (-) True G133085
TU153256 lncRNA upstream 148519 32366689 ~ 32367374 (-) True G133063
TU153295 lncRNA upstream 180060 32398230 ~ 32399418 (-) True G133099
XR_002468177.2 mRNA downstream 20395 32068818 ~ 32075136 (-) True LOC110487099
XM_036945753.1 mRNA downstream 39293 32027226 ~ 32056238 (-) True LOC110487053
LOC110534740 mRNA downstream 189401 31897466 ~ 31906130 (-) True LOC110534740
LOC110534727 mRNA downstream 202626 31889030 ~ 31892905 (-) True LOC110534727
XM_036945738.1 mRNA downstream 224304 31867097 ~ 31871227 (-) True LOC118939268
XM_021559094.2 mRNA upstream 150452 32368622 ~ 32370951 (-) True lysmd1
XM_021559071.2 mRNA upstream 156452 32374622 ~ 32387882 (-) True LOC110487143
XM_021559104.2 mRNA upstream 209417 32427587 ~ 32429982 (-) True LOC110487180
XM_021559115.2 mRNA upstream 214297 32432467 ~ 32441999 (-) False ensab
XM_021559165.2 mRNA upstream 271434 32489604 ~ 32497994 (-) True LOC110487241
TU152378 other downstream 446736 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 552522 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 896719 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 899811 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 520659 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 520659 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 530038 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 994494 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1647318 33865488 ~ 33865937 (-) True G134668

Expression Profile