RNA id: XM_021559133.2


Basic Information

Item Value
RNA id XM_021559133.2
length 1961
RNA type mRNA
GC content 0.44
exon number 16
gene id hormad1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32442246 ~ 32455246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTGATATCACTAATCACTCAATGCATGTTGTGGTGGCAAGAAAATGTACGTTATCTAAGCTTCCCTCTGATTGGCTACTTTAGCTGTCAGGTTTGGCGGGTAAATGTGTGTGTCTGGCGCGAGTTTGGCCCAACATCCAACAGTTTCTTAGTAAATTCGGTCTGGCTAGCTTCTAGATTGTATTTTTGTTGTAATTTTTTTAACCAAAAAACAAATTGAGTGACTGCGCTCTATCTAGGTAGTAATAGCTAGCTATATTTGACAACTTGTTATCAACTATTACTACCATGGCCTGTGAACAACGTTTGCGGGCTGCTCAGGGCACCCAGTTGCTGCCAAATGTAGTTTCAACAGAGCAGCAGTCCTTGATTGTTGTGAAGAAACTGCTGGCCATTGCAGTCTCCAGCATCACTTATCTCAGGGGTCTTTTCCCAGAAAAAGCTTATGGGAGAAAATATGTTGAAGAGCAGAAAGTTATGATCCTCAGGGAGGAGCGCACCTGCCCTGGTGCCAGTCAGATTGTACAGTGGATGCATGGATGCTTTGATGCCCTTCAGAGAAAATACTTGCGGACGGTcgttatgtctATATACACAGACCCAGAGAATCCAAAGAAGGTTACTGAATGCTACCAGTTCAAAGTCCAATACACTGAAAAGGGACCCAAAATTGACTTTGAAAGcaAAAACAGCAAGAATCTGGGAAAACTGGCTTGCAGCAGCACAAAAAAATCCAGCATCCTTCTGGTGCGTAAACTCTACACACTGATGCAGAACCTGGGTCCTCTGCCAGACAATGTCTGTCTTAACATGAAACTCTCCTACTACGACGACGTCACTCCCCAGGACTACCAGCCCCCAGGCTTCATGGAGGGGGACGGCGATAGCATGCAGTTTGAGAAGGAGCCCGTCAACTTGACCATGGGCGAGGTGGTCACTCCCTTCCACACCCTGAAGGTGGACgtgaccacagagagagaaaggctggAGCAGGTTGATGACGAGCAGCCCATCTGCGTGAGGGACAAGTGGGAGCTGAagatggaggagggggggacAGTGACCAAGATCAGCAGTCAGCAGACCCGCATGATAAAAGTAATGGAAAATCCGGACAATGACATTCACTTGGACAATTCTGAGGTCCAGGTGAACTGCCAGGAGAAGATGGAGGTGTGTGAGGAGAGCACAGAGAACTCTCAGaTGGACACTTTGGGAAAGAGGACATCTGACCTGGAAGTGGTCATTAAGAGGACCCGGAGCGGACGCGTCACCAGGTCCACCCTGgagAGAAAGGCTGAGACTGAGGTGCACAGTGTCAAGAAGAAGAAGCCCTCTCCCATCGAAGACAAAATGATATCGCAGTTCGAGTTCCCCTGCAGTCAGGATGTCCAGGCCTCTGTGCCGAAGAAACGTAAGTTCAGCGAACCCAAGGAACGCTACTGACCTCCCCACCTTACCTATAAGATACCTGTCAAGACAAGAACCGATGTTCTAATTTGAATGGCCTCTAGGCCTTTTTAGTTATTTTAAAGGAAAAGCTGTAGTGCCCACCGCCAACACCACAATAGTACCTCTGCATTCTGTTGTTACAATGGGAAGGATACAGGAAATGGTTCTTTCTAGTCCACCTTGTTTATGTTTATACTTTTGTTTCCATTGTTGAGTTACATGCTAGTGTGTGATATGGAGACTGGGAAAAATTTATTTTCTACAATTGTATATTAGGGTCTGTGAAGTGCAAAACTCacagttttatttatttcaaaggATGACATTTTCATTGTGAGAATTACTTATTTTTGTCTTTTGATTACCATGAACGTTATACTGTGCaaaattgtgtttatattttataTTGTTATATAAAGTATCAATATACAGTACCCTCCAGTTGTAAGTTATTTGATTAAATGTATGTTTCTAATAAATTAAAGTGCCTTTTCTCAGTTTTGAAAA

Function

GO: NA

KEGG:

id description
K12778 HORMAD, HOP1; meiosis-specific protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153157 lncRNA upstream 25370 32416644 ~ 32416880 (+) True G132966
TU153155 lncRNA upstream 29766 32412235 ~ 32412484 (+) True G132964
TU153153 lncRNA upstream 30969 32411013 ~ 32411281 (+) True G132962
TU153152 lncRNA upstream 32592 32409418 ~ 32409658 (+) True G132961
TU153151 lncRNA upstream 32996 32408998 ~ 32409254 (+) True G132960
TU153165 lncRNA downstream 20 32455266 ~ 32455481 (+) True G132973
TU153334 lncRNA downstream 24658 32479904 ~ 32480174 (+) True G133137
TU153323 lncRNA downstream 32810 32488056 ~ 32489364 (+) True onecutl
TU153322 lncRNA downstream 34407 32489653 ~ 32492175 (+) True G133125
TU153354 lncRNA downstream 56579 32511825 ~ 32512395 (+) True G133154
XM_021559085.2 mRNA upstream 68377 32370802 ~ 32373873 (+) False scnm1
XM_021559078.2 mRNA upstream 68377 32370912 ~ 32373873 (+) True scnm1
XM_021559060.2 mRNA upstream 76903 32356928 ~ 32365347 (+) False tnfaip8l2b
XM_021559058.2 mRNA upstream 76903 32356929 ~ 32365347 (+) True tnfaip8l2b
XM_036945773.1 mRNA upstream 93282 32332091 ~ 32348968 (+) True LOC110487115
XM_021559144.2 mRNA downstream 22404 32477650 ~ 32489444 (+) False onecutl
XM_021559194.2 mRNA downstream 70486 32525732 ~ 32543737 (+) True lingo4b
XM_021559185.2 mRNA downstream 95661 32550907 ~ 32568058 (+) True si:ch211-113g11.6
XM_021559175.2 mRNA downstream 114194 32569440 ~ 32582549 (+) True tlr18
XM_021559274.2 mRNA downstream 133943 32589189 ~ 32592242 (+) True LOC110487342
TU152486 other upstream 554678 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 559177 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1075928 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1079037 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1149216 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 712192 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1041208 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1358787 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1507171 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2232709 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile