RNA id: XM_021559144.2


Basic Information

Item Value
RNA id XM_021559144.2
length 5971
RNA type mRNA
GC content 0.45
exon number 3
gene id onecutl
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32477650 ~ 32489444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagagaagcgaAAGAGTTGGTGGGGCTGAAATCGATGAAGTAGCAGGctgagggaagaggaggaaaatCTCACGAGATAATGAAAGAAAAAGAGGAGAGCTGCTAGGTAGAGAAGAGCGAGGCTACAGTTGGACGTTTGACTTTAAAAAATACGAAAGGACAGGGAAAGGACGACGTATACCGAACCGCCAATTGTTTGGCCTCTTGTTTTATTGTGTGAAGCATCCCTCCATGCATCTGACCAATTGTGTGAATCTGCGCGGACAGGCTGGAAGACAAGAGACAAGCGACACAATCGGAGAGATGCAGAGGACCGACAACAGACGCGGATGCGCTCATATAACGGAATAAGGCAAAAGAGCGACGATTCTGCGGAGGAACACAGTTGAGCCCCAAAGAAAGGATGAGAAGAGTGTTGTAGCACAAATCCAAATAATGTGATAGTTAATCTTACTGACGCTGCTTCACACTTGATTTCCTGGAGTTTGAAGGAGTTTAAAGATACTACTTAAGTTGTTATCAGATAATTAATTAGACCGTATAGAAGCTCATAAATCAATCCATTCAGAAATCGATAAATCCATAGTATTGTGCAACAGAAGAAGAGCCATCCAGACTGTTAGGCTACTGTTAAACAACAACTAGGCTACTGAAACAACACCATAAAGATAGAAAAAAAGGTCAATtaactgaattcaaaatggatggaAGTCTAGGGGAGATGTCTGTCCAAATCCACTCTGAGCTCCATAGTCAGGATGGCAGAGCGATGCTGCATTCACGGGACCTTTCAGCTGCTTTCCCCAGGCCCTCCCTTGGGGGGCACTCCATGTCCCTGGAGCATGAGCACCGACCTCCAGGTTTCGACCACTCCATGTCAGCCCTGGGCTATGGAGGAGATGCTCCATCTAGCTGTGGCAGCACGTACACCACACTAACCCCCCTGCAGCCCTTCGATGACAAAtttcaccaccaccatcaccaccaccatccctGCCTGCCGGTCAGCAATGTCATCGGGAGCTTTACTCTCATGCGCGAGGACAGAGGCTTGGGTGGCAACTTCTACAACCCTTACGGCAAAGATCTGGGGATGACACAGAGCCTTTCGCCACCTTCTACAGGCTCTGGCTTGGGGACACCCATGCACGGTTATGGGAGCCTGGGAAACAGCCCCAACGGCAATGGTGGCCAGATGCTTCCAAGTGGTTACGAGGTCCATGGGGGCAACATCTTCTGCAGGACGGCGGACTTCGGCAGGGAGATGTCCCCTTCAGGGCTGGGCGGCGACTCGTCGGTCAGCCATCAGCTGAACAAGATGGAGACTCACCAACACGCGCCCAGCCACCATCCTCACATCTACAGTCagcactaccaacaccaccaccccagcCAGCAGTCCTCAAAGGCCGGGGAGCTCTCCCACTCCTCGTCCTCTTCGCCCAGCAGTGAGGGCATGCTGCCCAGCTCCCAGGgcggtggaggtggaggggctgGAGAGGAGATCGACACCAGGGATGTGGCCCAGAGGATCATCACTGAGCTGAAGAGGTACAGCATCCCCCAGGCCATCTTTGCAGAGAGGGTGCTGTGTAGGTCACAGGGcactctgtctgacctcctaaggAACCCCAAGCCCTGGGGCAAGCTCAAGTCTGGTCGCGAGACCTTCAAGAGGATGTCCCGCTGGCTGCAGGAGCCCGAGTTTCAAAGGATGGCCTCACTGCGGCTGGAAGCTTGCAAGCGGAAGGAGCAGGAGCAGAGTAAACTGGAGCGCAACCAGGGCCCCAAGCGCACCAGGCTGGTGTTCACGGACCTCCAGAGGCGTACCCTATTGGCCATCTTCCGGGAGAACCACCGGCCAGCCAAGGACCTCCAGGTCACCATCTCCCAGCAGCTGGGCCTGGAGCTCTCCACCGTCAGCAACTTCTTCATGAACGCCCGACGCCGCAACGTCAACAAGTGGGCGGAAGAGGGCCGCCCCTCCTCCACAGGCTCCTCGGGCTCCAGCGTGTCCTCCTCCGCCGTGTCCTGCAGCACGGCCTGATGGGATAGAGGTGGGCTGGGTGGGCGTCGTGGCAGCAGAGGGCACATAGACTGGTCTAGGTAGAGATCAGGCGTAATAATGTACTCCTCGTTattagagggagtgatggagttgGCGTAGTTTAGTTTTTATGAAGAGTTATCACAGAGCATTTCAAACCAAAGTTGATCACTCCTTGATATTGAAGGGGTGATACCCAGAATAATATGAGAACTTGTATGAGACAAGTTCCTATAATTTGAATGGTCGTGGGTGAATAGTTTATTCAAATTTTAAGAGGGTAACAGTGAGAACCCTTGATTTCTTTAATTTCATCACATTCAATTTGAATATGGTAGGTTATGAAATCATATACAATTTCATTTGCCACATGCTTCGTTAACAagaggtgtagactaacagtgaaatgcttacttacgggtcgtTTTCCAACAATCCAGAGTtaaaaatgcatttttttattttttattatgacaCACGGAATAATATGGTTATGAGGCTATTAATAATCAGGACTTTTTTTTGCCCTCAGGGCTAATTTTATCTCCCTTAGTAGAAAGAGAAatcaagaggcatcactgcattGCATAACACCCCTAATTCAAATTTTCACCACCCGTTACATCGACAGATCTCCATCTTATGTCCTTTGTTTCTCTGAGGAGTCAAGACGAAGGTCACGGAGAATAACATGGGGATTGTGACAAAATCAGAGCTCCATCACGTTTTCTAAAGAATGCGGCATGTGTTCCCATATAACATGGTTCGCAGGACTGCAGAACTCTCTGGATGATCAGGaggttatttctctctctacgaTTCTCCGTTTTCAATCATTACCTGTCACGAGAACCTTGACTTTTATTTTACACTTCTTGACAACGGTTCCAGCTTGAATGAATCACAGTTTTCAAGGAGCAACCTTGGTGTGTCTCACTTTAAATCGGGACAGAATCAGTAAATAAGGGCAGAATTTCAAGGGATGCCAAGTCAGAGACTTTTTGATGCAACCCTCCAGCTTTAAGACATTGACTGACCTAACACACAAAAGCTCTGTAGCCATTTTGACTCAACCAAAACACTTTGAACACGACGGACGCAATGGAAAGAAGTACTTGTAACACAATGTATAGTAATGGTGTAGTATTTTTTCCACTCATGTTTCAAAACACTTAACTGAACAAACCTCGGCTCCATTGCAAATCTTTTTTTACAGACGCCTGGAAAATGGAGGAATGTGATTCTTTCAGCCCTTTTGTACAGATTTCAAGCACATTGCTCTATTTATAGAAATCCAATGGAAGTATGAGTTGTTGTTCCAGTCCTGCTACGTACACCAAGGTCATTTTAGTTCCTCGAGGGACGGTTTTAACATGCCTCTTTATAACCAGTTTCATTGGAGCAAGAATTTAAAATGCCATTGCTGAACTGATCAATGTATTTATTACTGCATTTCTGTATTtattgtttttcttttgtttCTCTCTATTTATTTGGTTGTTTATTTATGCTATCTATATACTGTAAGTATTTATTTAATAATGCTTTGTATGTCTGTGTGAAACATAATTTTTTTCTGATGGGCACTTTTAGTTGTAGAATCCCATCGTAATACCAAAGATTAAGATTGTCCTCCCTGAATGTATGGCCTaaacccctttcctctcccccgaCTCCCAGTGATGTTACGTATCTCTCTCTTTAAGGCCTTTGTTTTGTAGAATAATGGGGATTTCTTTACTATTGGCAAATGTCTCTGTGGTCAGGTCTTATGCCAAGACTAAGCTTGTTTGAATGTTGTGGTAATGTGACATCTCATAGGTTCACAAGTTGCTTGTAAAATTGTGTTCAAACATCATTCGGCAGAGTGTCTGGAGAGTCCAGGGATGCACTTACAGAGCTTTTCAGGCTCTTAAGTGTGAATCCTTTGAGTCCCCATGGAAACATGCATGCTGTGCATCTTCCTGGGGTTTGCATAGCAGTGACTCCCCTTGCTGCAGTGCACACGCTCCTGTCTATGTCCTGCTCAATGTGATTTCACCATCCTCCAGACTCATCCCTTCTGCCAGTCTTCTCAGTTCCACAGGCTCCTCTAGCGTGTTCTCGGTTTTGCTTTGTTGGGTAGTGGAGAGGGATAGCTTGTCCACCAGCTAGCGTGCACCTCTCCTGTCTTTAACCTTgggaggggcgtgttgtcggggcCCCTTCACAGCGTGCACTTGAAAGATGGGCGGTCATGAAAGAGGCCATCGACTTTTGCAGACTTCAAAGGGAGCCTTTTTCATCCGTCTCCTCTCTGCGTATCTGGTCTAAGGGTCTGCTCCTGGCCAGACCCGTGGGTTTAGGGGTATTCAAAGGGGGCGGGGAGATCAGAGAAGTGGCTGAATCACCCCTGAACAGGGTGCAATGTTTTGGGAGAGGGGGTGGAAGGGCACAATAGAGTAGAATTAAAGTTTAATGAGCAACAATTGTAAGCATGCTGGGACCAAGGGAGGGGGCCAGTCTGGTGCAGGGAACATGAAAACCCCTACCAATTTTGATGTTCCTTGTTTTCTAGCTTGTCATGTGGTGTTCTATCAAAGACAATAGAATAGGTCCCCATGACACCTTTATTATTTTCCCGCTGCCCATATTTTAGAATAGAGTCTGCCTTCAAATGGGAGAGAGACTTCACAGTCATTCTCTGCTCTGTTTTACCTGAGGAGAGATCTCTCCTTTGAATGGAGAGTTGATAAGACCATTGCAGATGGTCTGTCATCAATTTAGCCTGTTGCACCCCCTAGTGGATCATAAAGAAATGTCTCTCTAGATTAAAGGACATCTTAGTCGACAATGTTTTCAAGCTCTTCTGGGGCTTAAAAACACAGGTACATTATATACCAAAGTATAACTGAATATGCATGGATACCCCCTGATATTGTTTTTGTACTATACGTGGGGTTATCATTCCATCTTAATTAGTACACCAGAAATCCAAAGATAGTGAAGTCCAGTGAGATGAGTTAAGTAGCACATTATTTTTAGGTTCAGCATTTGAAGTTGGAACTGAGAGATTGACATGAAGTTGTGACTGTAGAGGAAGTATTTGGACTCCGTAACCCCAGTGTTCCCTTTGTCCCCCTGTGTACATGAATACTTACCCATCTACCTCAACTGTGTGAGATGTTGTGTGGCAAATAAGTTTCTTAACCAAAGATTCCATCctttctgtctatctgtctgtccaaCTGTCTCTCATGCTTTTTCAAAACCAAATGTGCTGGAATCAATCTGTTACAGGAGCAACCAAGCCCCATCCAGCCAAAGCGTAGTCCAGTGTACTACAGAAGTCATACTTACCAATAATCTGTTTATAATCATTTTCAAGACCAAAAAAGTAGGTGACAATCCAGGCAAGGAGGATCTTGCTGTAATCAACGTCGCCTATTCCTTGTACCAAACTAGAATCATGTGACTTACTGTAACAGTTATGAAAGCCCAAGAATCAAGAGTTCAACCAAAAACAAAAGGTCAAGAGGAGACTAAAGCTATTTTTTCACATTTGTAAAACCATTACCCCTTTTCCAATATGTTAGTGTATTTGAAATACTGTTTGATCCCACTGTTGGAAGCAGGAATAAATGACTCAATTCAAAAGCTTTAACAAGGCCAAATTGAGGGAAATATTGTATTTGACATGGGTTTGTGTCTGGGTTCCTAAACTAGGACTCACCCACCATACTTATCGTGCCATTCTCGTCCATGTGTTAGACTAACTAATGAATGTGGCTAACCAACCAAAGGCTTAAAACACAACACTTTAAATGTCAATCATGGTGGGACATTTTGTAACAACTAAAGAGAATCCCTTTGAATACCTCATGTGAAATTGTTTGTTGTGATGTTGCACCAAAAAATTAAAATGACTCATTTGTAACCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153165 lncRNA upstream 22169 32455266 ~ 32455481 (+) True G132973
TU153157 lncRNA upstream 60770 32416644 ~ 32416880 (+) True G132966
TU153155 lncRNA upstream 65166 32412235 ~ 32412484 (+) True G132964
TU153153 lncRNA upstream 66369 32411013 ~ 32411281 (+) True G132962
TU153152 lncRNA upstream 67992 32409418 ~ 32409658 (+) True G132961
TU153322 lncRNA downstream 209 32489653 ~ 32492175 (+) True G133125
TU153354 lncRNA downstream 22381 32511825 ~ 32512395 (+) True G133154
TU153357 lncRNA downstream 25564 32515008 ~ 32515207 (+) True G133157
TU153363 lncRNA downstream 31366 32520810 ~ 32521095 (+) True G133163
TU153399 lncRNA downstream 56334 32545778 ~ 32545991 (+) True G133185
XM_021559125.2 mRNA upstream 22404 32442246 ~ 32455246 (+) False hormad1
XM_021559133.2 mRNA upstream 22404 32442250 ~ 32455246 (+) True hormad1
XM_021559085.2 mRNA upstream 103777 32370802 ~ 32373873 (+) False scnm1
XM_021559078.2 mRNA upstream 103777 32370912 ~ 32373873 (+) True scnm1
XM_021559060.2 mRNA upstream 112303 32356928 ~ 32365347 (+) False tnfaip8l2b
XM_021559194.2 mRNA downstream 36288 32525732 ~ 32543737 (+) True lingo4b
XM_021559185.2 mRNA downstream 61463 32550907 ~ 32568058 (+) True si:ch211-113g11.6
XM_021559175.2 mRNA downstream 79996 32569440 ~ 32582549 (+) True tlr18
XM_021559274.2 mRNA downstream 99745 32589189 ~ 32592242 (+) True LOC110487342
XM_021559257.2 mRNA downstream 107657 32597101 ~ 32605620 (+) False isg20l2
TU152486 other upstream 590078 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 594577 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1111328 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1114437 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1184616 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 677994 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1007010 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1324589 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1472973 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2198511 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile