RNA id: XM_021559165.2


Basic Information

Item Value
RNA id XM_021559165.2
length 1510
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110487241
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32489604 ~ 32497994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCAATGAGGAAGTTCTACCACATGACTTGCACAAATAAATATCAAGCAGGAAAACAGATCCCACTGAAATCAATTGACGCGCCTTGCTCTCCTCTGAAGTCATCATCAGGTGCAACCGAGTTTTACAAGGCATGATGTTGTGGAGCCTGCTGCTCGCTGTGCTATGTGGCACAGCAGTTGCCCTGTTTGACCCAATGCTGGAACAGCACTGGCAGATGTGGAAGAAGACACATAACAAGAACTACCAGACTGAGGTTGAGGAGCTGGGCCGAAGGGAGGTCTGGGAGAGGAATCTTCAGCTGATCAGCCTCCACAACCTCGAGGCATCCATGGACATGCACACCTATGACCTGGGCATGAATCACATGGGGGACATGACCCAGGAGGAGATTTCCCAGTCTTTTGCCTCATTGCGTGTTCCTACTGACCTCAAGAGGGAGCCCTCTGCATTTGTAGGATCCTCCGGTGCCCCCATACCTGATACCATTGACTGGAGAGAGAAGGGCTATGTCACTGGAGTCAAAATGCAGGGCTCCTGTGGCTCCTGCTGGGCATTCAGCTCTGTCGGGGCCCTGGAGGGCCAGCTGATGAAGACCACAGGTAAACTGATAGATCTCAGCCCCCAGAACCTGTTGGACTGCTCCACCAAATACGGCAATCAGGGCTGCCACGGTGGCTTCATGACCAAGGCCTTCCAGTATGTCATCGACAACCAGGGCATTGCCTCTGACCAATCCTACCCTTACAAGGGAGTGCAACAACAGTGTAGCTACAACCCTGCTCAGGGTGCTGCAAACTGTTCCAGATACAGCTTTCTGCCTGAGGGGGATGAGGGGGTTCTGAAAGAAGCACTGGCCATCATCGGACCTATCTCTGTCGGCGTTGATTCCACCCGACCTAATTTTGCCTTCTACCGCAGCGGAGTTTACAATGATCCAACTTGCACAAAGAAGACAAACCATGCTGTCCTTGCTGTGGGGTACGGTACCCTGGGCGGGCGGGATTACTGGCTGGTGAAGAACAGCTGGGGTTTATCGTGGGGAGACCAGGGATATATACGGATGTCACGCAACAAGGACAACCAGTGTGGCATCGCCTTGTACGGCTGCTACCCTGTCATGTAACTCATGCTAATCAACGTGGCCTAACTGGAAAAACGGAGCCCTTTTATTAATTGAATATAATTCATTTTTACTAGCTCCATTGTTTTAGTCTTGTTTTACCATTTCACTTTCTGTCACTTTCTGTCTATATAGACAGTACTTCTTTAAAATAGTTTTTAGATGTCATGTATAAGGCAATTGTGATTATCTACATTATCACTGTATCTAGCGTCCTGTCCAGCGGGTGTACTAGTACATCAAgttgcctcacactacagaaacaggagctAGGCTCTTGCTCGTATGAGCCGTTTTAGCTCGCACATGCCAAGGCTCGTGCAAAGCTACTTACTTGCTTAAATTAAAGTATATTTTGTCATTGAATAAATATAacttttaaagaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153314 lncRNA downstream 30227 32459146 ~ 32459377 (-) True G133118
TU153311 lncRNA downstream 34488 32454640 ~ 32455116 (-) True G133115
TU153310 lncRNA downstream 35657 32453719 ~ 32453947 (-) True G133114
TU153309 lncRNA downstream 36755 32452641 ~ 32452849 (-) True G133113
TU153176 lncRNA downstream 47651 32430455 ~ 32441953 (-) True ensab
TU154254 lncRNA upstream 11137 32509131 ~ 32509373 (-) True G133960
TU154256 lncRNA upstream 12161 32510155 ~ 32510540 (-) True G133962
TU154284 lncRNA upstream 47781 32545775 ~ 32546003 (-) True G133990
TU154286 lncRNA upstream 49495 32547489 ~ 32547707 (-) True G133992
TU154331 lncRNA upstream 184616 32682610 ~ 32684723 (-) True G134027
XM_021559115.2 mRNA downstream 47605 32432467 ~ 32441999 (-) False ensab
XM_021559104.2 mRNA downstream 59622 32427587 ~ 32429982 (-) True LOC110487180
XM_021559071.2 mRNA downstream 101722 32374622 ~ 32387882 (-) True LOC110487143
XM_021559094.2 mRNA downstream 118653 32368622 ~ 32370951 (-) True lysmd1
XM_036945765.1 mRNA downstream 271434 32095531 ~ 32218170 (-) False LOC110487106
XM_036945823.1 mRNA upstream 809 32498803 ~ 32505857 (-) True ctsk
XM_021559212.2 mRNA upstream 94669 32592663 ~ 32597151 (-) False rrnad1
XM_021559218.2 mRNA upstream 94669 32592663 ~ 32597152 (-) True rrnad1
XM_021559238.2 mRNA upstream 134985 32632979 ~ 32636515 (-) False LOC110487305
XM_036945880.1 mRNA upstream 134985 32632979 ~ 32640545 (-) True LOC110487305
TU152378 other downstream 840809 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 946595 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1290792 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 1293884 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 240835 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 240835 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 250214 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 714670 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1367494 33865488 ~ 33865937 (-) True G134668

Expression Profile