RNA id: XM_036945823.1


Basic Information

Item Value
RNA id XM_036945823.1
length 1665
RNA type mRNA
GC content 0.50
exon number 8
gene id ctsk
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32498803 ~ 32505857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGGAAACTTTTTCCCCTCCTAAATTTAGAACTCCCTTTGCACTTCCTCAAACTGCAGACTATATAACTGCTCACACAGTGACCTACTTCATCGTAGGGAAACAACTGGTCAAAGGAATTCATCCGACATCTTCTCTTCAAGTCTACGACCAAGAATGCTGCTGTGTGGTTGTGTACTGCTGTTCTTGGGCTCAGTCCTAGCCCATCCCCTGAACGAGATGTCACTGGAAGCACAGTGGGACTCCTGGAAGACCACCCACCTGAGAGAGTACAACGGCCTGGGGGAGGAGGCGATCCGTAGAACCATCTGGGAGAAGAACATGCGTCTGATCGAAGCCCACAATGAGGAGGCCGCTCTGGGCATTCACTCGTACGAGCTGGGCATGAACCACCTGGGAGACATGACGTCAGAGGAGATAGTTGAGAAGCTGACTGGCCTCCAGGTGCCCATGAACAGGGACCGTAGCAACACCTGGATCCCTGACAACAATGTGGTGAAGCTCCCCAGGTCCATCGACTACCGCAAGAAGGGCATGGTGACCCCAGTCAAGAACCAGCTCTCCTGTGGCTCCTGCTGGGCCTTCAGCTCTGCAGGGGCCCTGGAGGGCCAGCTGGCAAAGACCACAGGCAAACTGATAGACCTCAGCCCACAGAACCTGGTGGACTGTGTCACTGAGAACAATGGCTGTGGTGGAGGCTACATGACCAACGCCTTCGAATACGTTGAGGAAAACGGAGGCATCGACACAGAGGAGGCTTACCCTTACCTTGGCCAGGATGAGCAGTGTGTCTACAACGCGTCTGGCATGGGTGCTCAGTGTCGCGGGTTCAAGGAGATCCCTGAGGGAGACGAGTGGGCACTGACCAAGGCTGTAGTCAAAGTGGGGCCTGTGGCTGTGGGCATTGATGCCACCCTCTCCACCTTCCAATTCTACCAGAGAGGCGTGTACTACGACCCCAACTGCAACAAGGATGACATCAACCACGCCGTGCTTGCAGTGGGCTATGGACAAACTGCCAAGGGTGTGAAATTCTGGATCGTCAAGAACAGCTGGAGCGAGAGCTGGGGCAAACAGGGCTACATCATGATGGCACGTAACCGCGGGAATGCATGTGGCATTGCCAACCTGGCCAGTTACCCCATCATGTGAACACCAAGCGGCGGAGTGCACCATGGAGGCAGGGAAGCCAAACCACATAGCAATGACTACACACGATACAGAAAATAACACTATGTTTCTGGAATAGCACATTCATATAGTCTGGAAGTTTGGGTATCCCAGAGTTTTTTTTGCAACCTACTCAAGTCTTACTGTTATATCTTCAAACTGCCAGACTTCAATTGTAGTCTGATCTACAGTGGAACAACTATGATTGTGATGAGGAATCTGTGTAGTGCACAGCACTTTGCATAGGTTGTATTCAGTGTGTCAGGTCAGGTAACATTGCTGTGCAATGGGAGTTTTGTCTCACTTTCCTGTCAATGCAAAAAGGTATTAAACTTAGTAAATGTAAGTGTGTGTCGATCAAGATTGCTCCTGGTGGGTTTTTCTTTGAATGATGTTGACTTTTATTTTATTGTTCAGCACTTTTACACCAAAATCTGATGATTGAATTGTAACATTGCTTTCTATGAAATGGAATAAAAGTTGATTAATTTGAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01371 CTSK; cathepsin K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153314 lncRNA downstream 39426 32459146 ~ 32459377 (-) True G133118
TU153311 lncRNA downstream 43687 32454640 ~ 32455116 (-) True G133115
TU153310 lncRNA downstream 44856 32453719 ~ 32453947 (-) True G133114
TU153309 lncRNA downstream 45954 32452641 ~ 32452849 (-) True G133113
TU153176 lncRNA downstream 56850 32430455 ~ 32441953 (-) True ensab
TU154254 lncRNA upstream 3274 32509131 ~ 32509373 (-) True G133960
TU154256 lncRNA upstream 4298 32510155 ~ 32510540 (-) True G133962
TU154284 lncRNA upstream 39918 32545775 ~ 32546003 (-) True G133990
TU154286 lncRNA upstream 41632 32547489 ~ 32547707 (-) True G133992
TU154331 lncRNA upstream 176753 32682610 ~ 32684723 (-) True G134027
XM_021559165.2 mRNA downstream 809 32489604 ~ 32497994 (-) True LOC110487241
XM_021559115.2 mRNA downstream 56804 32432467 ~ 32441999 (-) False ensab
XM_021559104.2 mRNA downstream 68821 32427587 ~ 32429982 (-) True LOC110487180
XM_021559071.2 mRNA downstream 110921 32374622 ~ 32387882 (-) True LOC110487143
XM_021559094.2 mRNA downstream 127852 32368622 ~ 32370951 (-) True lysmd1
XM_021559212.2 mRNA upstream 86806 32592663 ~ 32597151 (-) False rrnad1
XM_021559218.2 mRNA upstream 86806 32592663 ~ 32597152 (-) True rrnad1
XM_021559238.2 mRNA upstream 127122 32632979 ~ 32636515 (-) False LOC110487305
XM_036945880.1 mRNA upstream 127122 32632979 ~ 32640545 (-) True LOC110487305
XR_005036400.1 mRNA upstream 234896 32740753 ~ 32756866 (-) False LOC110514821
TU152378 other downstream 850008 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 955794 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1299991 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 1303083 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 232972 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 232972 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 242351 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 706807 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1359631 33865488 ~ 33865937 (-) True G134668

Expression Profile