RNA id: XM_021559194.2


Basic Information

Item Value
RNA id XM_021559194.2
length 3770
RNA type mRNA
GC content 0.47
exon number 3
gene id lingo4b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32525732 ~ 32543737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGCTCTCTGTCCTCATGGACAAGTGTTTCATTCATGTCGTTGACTGGTTCGTTGATTCACACCTATAGGCTACTTTCCTCCAGTTCGCTTGAGGTAATTGTGATATTTGTCTGTGGGATGCGATTGCGACTTAAGCAAGAGCATCACTACCACGCAGAAGAGCACGAGCAGGGGCAAGAAGGCGGGCTTTCAACAGCGTCAGAAGAGAATAAAGTAGTCGACCTAAATTATTTTCCGTAGCGTAATTATCCTACTACTCCCCGAGGGTGGTGCAGTAATCAGAAGAAATTAATGAAGGAGGACGAATTAAATTGTGTGAGGTCTCAAGGCATATGTTTTAAAGTCTTGTAAAACATGATAAATCAACCAGCAACCGAACGAAAAGCTTAGGCGAGAAGGAACCCGAACGTTTGGAGTTGTGGGTAAAATATGGAAATGTTGTACTATCAACGTTTCATTGAAGTCATTAGCTGgCCATTTGCAaggacatgttttttttaaagaacatcaTCTCTTATAGAAGACTTAACTCAAGTCTGATCCCAACTTGACCACCACTGGTTATGAAAACCTGCATCCTCATAGTAAATCGGCAGGAGGCAAGATGTTTGTGGAGTCTGTTGTCCGATGGGGGGCATGGAGCATCTTGCTCCAGTGTGGATTATTGGGTGTGTCAGCAGGGGACTTCCCCTGGCCTTGCcctgccaggtgtgtgtgtcGGCTTGAGACTTTAGAAGTGAACTGCTCTGACAAACAGCTGACTTCTGTGTCTCAGGGCTTCGCTAGTGGCACCCAGCGCATTAACTTATCTCGTAACAAGCTGAAGACACTGGGTCGTCGCCAGTTCTTTGGATTGACCCAGCTAGAGGATCTGGACATTAGTGACAATGTCATCGCCATGATTGAAGTGGAGGCTTTCCAGGGCCTGCAGAACCTCAAGACCCTGTGCATTAGGAGCAACCGCCTCAAGATCATCTCTGTGGGGGTCTTCTCCGGACTGCCCAGCCTGCGCTTCCTGGACCTGAGTGAGAACGAGATCCTAGTCTTTCTGGACTACACCTTCCGTGAATTGGTGAGCCTGCACCAGCTGGAGGCTGGGGAGAATGATCTGGTGTTCATCTCCCAGCGGGCCTTTACCGGCCTGCAGAACCTGCAGGAGCTCAATCTGGACCGCAGCAACCTGACCTCCATCCCCACCGAGGCACTGTCCCAGCTCCAGAGCCTGACTCGGCTGCGCATGTTCCGCCTCACTATTTCGGCGCTGCCCAACAATGCCTTCCGCCACCTGCATCGACTGCGCAGCCTCGTCATCTCCCACTGGCCCTTGCTGGACACCCTGGCCAGCAACAGCCTGATTGGCCTCAACCTCACCTCGCTGGTCATCAGCAGCTGCAATCTCAGTGCTGTCCCATACCAGGTGCTGCGCCACCTGGTCTACCTTGGCTACCTGGACCTGTCCTACAACCCCATCACAGCCATCCAAGGTAACCTGCTGGGGGACTTGTTGCGGCTGCAGGAACTGCACCTAGCTGGGGGCAACCTGCTCCGTATCGAGCCAGGGGCCTTCAGGGGGCTGGCTTACTTCCGTCTGCTCAACGTGACATCCAACCAGCTCAGCACGCTGGAGGAGAGTGCCTTCCACTCGGTGGGGAATCTGCAGGTCCTGCGGCTAGATGGGAACCCCCTGGCCTGTGACTGCCGACTGCTCTGGGTGGTCCGCCGGCGACAGCGTCTAAACTTCGACGGCCGCCAACCCACCTGCTCCACCCCGGACATGGTGCGAGAGCGGGAATTCCGGGACTTCTCAGAGAAAGAGCTCCCGAGACTGTTCACCTGCCGGCAGGCCCGAATTGTAGACCGCAGGTCCCAGGAGGTCAGGGTGGAGGAGGGCACTACGGTGCTCTTCTCCTGCAAGGCGGACGGTGACCCAATGCCCTCCTTTACCTGGTTGTCAGCCCAGCGGATTCCGCTCTCCACTACGGGGCGCATCAGGGTGTTGTCCAATGGGACTCTAGAGGTACGCTATGCCCAGGTTCAGGACAGCGGCACATACCGGTGCACAGCGGGCAACGCAGCTGGCAACGACAGCCTGTACGTCAGCCTCTATGTGAAGGGTTTCCCACGTAACCGCACCATGCCCTTTTTCACCGACGAAGGCTGGATAGAGTCCTCACACGCCCCTACTGCCAACTCCTCTGCCCAGGTGGCCAACCAGTACCCGTTTGATGCCAAGACTCTGATCATCGCCACCACCATGGGCTTCCTGTCCTTCCTCAGCTCAGTGGCTATCTGCTTCGTCTTCATGTTCTTCTGGAGCCAGAGCAAGGGGCAAATCAAACACACAGCCACCATCGACTATGTGCCCCGTACCTCAAtgggggtaggaggaggaggaggaggggctggAGGTGATGCTGGCAAGTTCACCATGAAGCTTATCTAAGGTTATGTGGGAGAGGACTTGGGACACATTGACTGGCTctacagggacacagggacactgCCTGCCTTCATAAAAGCTAGATCCTCAGTGCACCCTTATAACATACTGAAATTATACATATCATCCTAAATATCTTGGAGAAGAAAATAATGAACAGTGGTTGTCTAGAAACTGGTTTATTTAAATGGTGTCAGTATTTATTCAACATTACAATTACAGTGCTACAAATCGAACATGATGATATGAAACATTATACATGTTCATGTGTATAAGGAATGCTCTTAAAGTGTCAAGGTTCATTTCACTCATATCAGGTGTGCTTGGTGGATCTGATGTACAGTAAGTGTGGATATCATGTGTCAACTTGCCAATACAGGTCAAGCAAGAATTGCCCTCTGACCTGAGGATAACTATTTATGCTTATCCACATAGGATCCATTCAGAGACTGCATACTCACCATTTGCTTAAGGCTCTATGAAACTATAATAATATGCAAACACATGactgtagttatatagttataataGATGTATAGAATATTGTACTAGGCTATATTAAAATACTGTAGATAAATCAGTTTCACTGTACAGTAACATTTCATGGCTCACTTTTTGACTAGCCTCTAGTTTACGAAAATTCATGTTGTTTTGGGGACAGGAGTATTATTTAGTTATCAGAATTTGACAGTGTCCAGCGGGTGATGAAATTCTAATCTGTACATGAGAATGTATCAATTCCATGTCATATTATAAACAATCTTTTAAGCTTTAAATCCTATTTCCATTTTCTTTTTTACAACAAAGTAAGATAGTTTGCACACATCAAATACAGAGAATTCAATATTATTTTTAGCAAGTCATTTTCTTTTTATACTGTATAATTTGGTAAGATATTGCAATCAGCAACAATGCTTCAATGATAATATAACTGTATAACATTCATGTAACCTCACACTGTTTATTTTTCCTGAATGTTAATCAATCACAGGGTATTGAAAATATGTGCCTGAGTAATCTCACTCGCCATTCAAGAAACAATGATGAACTGTAATGGCGAACAGTACCTTGTACAATGTCAAATGTAGGTCATGGACATTTCCATGCTCTAGGTTACTTTATGGCTGTATCTAGTCCTGTGGATTAGTGCCACTTAAATATGCCACTCTTCTTTCATGTACACTTGTTGTGTAGGTACACACAAACCAAAATTCCAATACAATGTAAATGATGTACACATCTATAGTTAAGTCTGTTGTTTTGCTATCTTGTTTGTAAAATATAATCTTTTTGCATTTTGAAATGATTAAAAACCTATTTTAACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153363 lncRNA upstream 4637 32520810 ~ 32521095 (+) True G133163
TU153357 lncRNA upstream 10525 32515008 ~ 32515207 (+) True G133157
TU153354 lncRNA upstream 13337 32511825 ~ 32512395 (+) True G133154
TU153322 lncRNA upstream 33557 32489653 ~ 32492175 (+) True G133125
TU153323 lncRNA upstream 36368 32488056 ~ 32489364 (+) True onecutl
TU153399 lncRNA downstream 2041 32545778 ~ 32545991 (+) True G133185
TU153373 lncRNA downstream 55646 32599383 ~ 32605599 (+) True isg20l2
TU153548 lncRNA downstream 300514 32844251 ~ 32844534 (+) True G133324
TU153604 lncRNA downstream 437445 32981182 ~ 32982028 (+) True G133374
TU153499 lncRNA downstream 451883 32995620 ~ 32996496 (+) False LOC110487479
XM_021559144.2 mRNA upstream 36288 32477650 ~ 32489444 (+) False onecutl
XM_021559125.2 mRNA upstream 70486 32442246 ~ 32455246 (+) False hormad1
XM_021559133.2 mRNA upstream 70486 32442250 ~ 32455246 (+) True hormad1
XM_021559085.2 mRNA upstream 151859 32370802 ~ 32373873 (+) False scnm1
XM_021559078.2 mRNA upstream 151859 32370912 ~ 32373873 (+) True scnm1
XM_021559185.2 mRNA downstream 7170 32550907 ~ 32568058 (+) True si:ch211-113g11.6
XM_021559175.2 mRNA downstream 25703 32569440 ~ 32582549 (+) True tlr18
XM_021559274.2 mRNA downstream 45452 32589189 ~ 32592242 (+) True LOC110487342
XM_021559257.2 mRNA downstream 53364 32597101 ~ 32605620 (+) False isg20l2
XM_021559264.2 mRNA downstream 53364 32597101 ~ 32605620 (+) False isg20l2
TU152486 other upstream 638160 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 642659 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1159410 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1162519 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1232698 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 623701 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 952717 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1270296 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1418680 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2144218 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile