Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021559274.2 |
| length | 1265 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC110487342 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 32589189 ~ 32592242 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K23758 | S100A1; protein S100-A1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU153399 | lncRNA | upstream | 43198 | 32545778 ~ 32545991 (+) | True | G133185 |
| TU153363 | lncRNA | upstream | 68094 | 32520810 ~ 32521095 (+) | True | G133163 |
| TU153357 | lncRNA | upstream | 73982 | 32515008 ~ 32515207 (+) | True | G133157 |
| TU153354 | lncRNA | upstream | 76794 | 32511825 ~ 32512395 (+) | True | G133154 |
| TU153322 | lncRNA | upstream | 97014 | 32489653 ~ 32492175 (+) | True | G133125 |
| TU153373 | lncRNA | downstream | 7141 | 32599383 ~ 32605599 (+) | True | isg20l2 |
| TU153548 | lncRNA | downstream | 252009 | 32844251 ~ 32844534 (+) | True | G133324 |
| TU153604 | lncRNA | downstream | 388940 | 32981182 ~ 32982028 (+) | True | G133374 |
| TU153499 | lncRNA | downstream | 403378 | 32995620 ~ 32996496 (+) | False | LOC110487479 |
| TU153489 | lncRNA | downstream | 404349 | 32996591 ~ 33002008 (+) | True | LOC110487479 |
| XM_021559175.2 | mRNA | upstream | 6640 | 32569440 ~ 32582549 (+) | True | tlr18 |
| XM_021559185.2 | mRNA | upstream | 21131 | 32550907 ~ 32568058 (+) | True | si:ch211-113g11.6 |
| XM_021559194.2 | mRNA | upstream | 45452 | 32525732 ~ 32543737 (+) | True | lingo4b |
| XM_021559144.2 | mRNA | upstream | 99745 | 32477650 ~ 32489444 (+) | False | onecutl |
| XM_021559125.2 | mRNA | upstream | 133943 | 32442246 ~ 32455246 (+) | False | hormad1 |
| XM_021559257.2 | mRNA | downstream | 4859 | 32597101 ~ 32605620 (+) | False | isg20l2 |
| XM_021559264.2 | mRNA | downstream | 4859 | 32597101 ~ 32605620 (+) | False | isg20l2 |
| XM_021559268.2 | mRNA | downstream | 4882 | 32597124 ~ 32605620 (+) | False | isg20l2 |
| XM_036945871.1 | mRNA | downstream | 16020 | 32608262 ~ 32632855 (+) | False | LOC110534753 |
| XM_036945867.1 | mRNA | downstream | 16170 | 32608412 ~ 32632855 (+) | True | LOC110534753 |
| TU152486 | other | upstream | 701617 | 31857648 ~ 31887572 (+) | False | G132342 |
| TU152482 | other | upstream | 706116 | 31857686 ~ 31883073 (+) | True | G132342 |
| TU151909 | other | upstream | 1222867 | 31360436 ~ 31366322 (+) | True | eaf1 |
| TU151908 | other | upstream | 1225976 | 31360436 ~ 31363213 (+) | False | eaf1 |
| TU151868 | other | upstream | 1296155 | 31291470 ~ 31293034 (+) | False | LOC110534710 |
| TU153719 | other | downstream | 575196 | 33167438 ~ 33169378 (+) | True | G133473 |
| TU153923 | other | downstream | 904212 | 33496454 ~ 33497285 (+) | True | G133663 |
| TU154038 | other | downstream | 1221791 | 33814033 ~ 33814483 (+) | True | G133760 |
| TU155162 | other | downstream | 1370175 | 33962417 ~ 33962658 (+) | True | G134735 |
| TU156107 | other | downstream | 2095713 | 34687955 ~ 34690946 (+) | True | si:dkey-30e9.6 |
