RNA id: XM_021559218.2


Basic Information

Item Value
RNA id XM_021559218.2
length 3007
RNA type mRNA
GC content 0.46
exon number 9
gene id rrnad1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32592663 ~ 32597152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACATCCTTAACAGCCAAACAATCGACTACTTCCGGTTCAGAGGTCGTGTTGTGAGGAAGAGCTACAAACAAACACTTCTTATCGTCGTTATATAAAACTCTTTCACTCGGTTGTAATAGTGTATTGTTGAAATGTTTAATGTTCACAATTTATAACCGGTCAGTTGCCGATTTGACGGTCGAATGATGTGCTCACCGACACTTTCAGCAGAGCAGCAAAGAGAGTTGGCAAGAAATCTTACATATTTTCTGTCGACATACAAACACATCTCCGATTCCTTCATAATTGAATTCTTCAGTGAGGATCTATGGGCTACATTGCCTACCAGATGGCAACAGATCCTCTGTGACCTGTCACCCCCACAAATAGCTGACCTCCTATTGGACAGATTGAATGTGAATAGAAGCTACTCTTGTGTATGGCCTCTTTCACTATTGGCTTTCCGGGCCACCGCGCATGCTCTGACGTTCCCCAGGACACCCCAAGGCAAGCGGAGACATGAAGTGGGCATGCTGAAGCCAGAGGAGTTCTTGGAGAACAAGAGTCAGAGCTCACTGCTGGGACACATATTTAGGAAACATGTGAAACCCAAGAAGCAGCATGAGATCCGGAGTCTGGGAACGTTGGTGAAGCAGCTTTGTGACCTGACAGACTGCAATAGTGTGGTGGATGTGGGTTCTGGACAGGGCCATTTGACTCGTTTCTTGTCTTTTGGGCTTGGTCTGTCTGTGACTGGAATTGAGGCTGATCCCACTCTAGTTTCCATGGCATCCAAATATGATGGACAGCTTCTGTGGACGCTGGAGAAGGAGCGGCAGAGGAAGAATGGACCTCCAATCTCTAGATCTGGCCCCTCACCCTGCCATGTGGCTGGCTGGGTCAACCCCAAAGCATCATGGAAAGACTTCGTCAAGCAGATTGAAGCCGGGCAAGGCCCATATGTCCACCCACTCTGCCAAGAGAGTTCATCCACAGAAGTTGTTGTCTGCCCTGTAGAAGAGGGGCAGGAATGTCCAGATTTTATCCTAACGGGCCTCCATGCCTGCGGGGACCTCAGTGCCACCCTCCTTCGCCACTTTGTCAGCTGCCCTCACGTTCGTGGCATCACCTCCGTGGCTTGCTGCTACATGAAGATCACCACCAGTGAGAACCCCAACCCCCCTGGCCTCATAGCCCCTCCCCTATCCCCTTTGCCCACCAGTGAGGCTTCTCACTCAGAGTTTGGCTACCCAATGAGCTCCTGGGTGCAGGGGTTGCCGGGACACCAGCTGTCCTATAAGGCACGGGAGGGGGCGTGTCACGCCATAGAGGACTACATGCACAGGCTGCGGGAGGAGAGTGGGTTGCTAAGGATGCACTGTTATCGGGCAACCCTAGAGACAGTTATCAGGGAGGCGAAGCCAGAGCTGCGCAGGCCGGGAGTCCAGGCAATAAAGAAAGCACATCTACTACCCTTTACAGAGTATGCCCGTCTGGGTCTGCCCCGCGTTGGCCTGCCCCCTGACCTGCCCCTGGACACCTGCAGAGTGGGGGCCATGCTGAGGCAGGAGGGTCGTGTGGTGGTCTACTTCAGCCTGGCTCTGCTACTGGCACCGGTGGTGGAGACACTGGTGCTGCTGGACAGGATGCTATACCTGCAGGAGAAAGGTATAAAGAGTCAGCTGGTGCCACTCTTTGACCCTGCGTTCTCTCCCCGAAACCTGGTACTGATGGCTTTGAAGCAGCCGACAAGGGACAAAGAGACTGAGTGCACCCTTCCGTAACCAAGGACACCTCTAGAACCGTGTGTTGTGTTCAGAGTTTACACCCTTACTCATTGGTGCTCAAGGACTTGAGTGTAAGTTTAGAAGTGAGTAGCTGTCTGAATATCCATACTAGCGTACTAcatacttcaactgtatactctGTACTCATTGTCACAAACTATTTTGCACGTACTGTCTGAATAGAATAGTAATGGAGTTATAGTTGTcttgatgtcctttgggttgtGAACCATTCTTGGTACACATGGGAAACGtgtggaaaacccagcagcgttgcagttcttgacacaaacctgtgcacttggcacctactaccataccctgttcaaaggcacttaaatctggTTTTCGTTTCATTAACATATTTAGTCAAACCCAAGTGCATATATAAATGAAATCAAATACCCTAGTACACACACAAACTTTTCAAATGTTCAAATCGACAAAAAAAACGTTGTCGGGTGCATCGCAAATTCAAAACTGCTGGATAGCAACATAAAACTAAAGCACTGATAATTGGGAATGACAGAACACTTTAATGAGAACAGAAATCCACTTtgggttaaaaaaataataattcaaaaGATGTAGCCTATGACGCTACACTCATGATCACTTTAAAGAGAACAAAAAACTACTTGGCCAACATTACATTTGAACACCACTGCAGAAGCGTTGCTATTCAGCATCTTCCTAATTAAGTTGTTTAATTTTGTTAGGCCCTAGTTCTAAGTAGCCAATCACTCGCAGCCCCCCTCTTCcaatgcattgtgggaaaatgtgcattgaattctactagatgagcTGAATGAGTAACATTTAAACCATACTTGATATTTGAAAATTGTATACTATAAAACTTAGTTTTCCCATACTGAGAATGCATCATGCAAAATGCATTGTTTCATGTTATTGGTTAATTTTGGTAGCACATCCCCATATCTAGTTGTCAAAGCTGAAATAAGGATATCTGGCTATTTAAAGTATACTTGATTTTCATGTTGCATACTATAAAACCTTTTTTTGCATAATCAAAATATTTAGGATGCAAGTATGGGTATTCAGACATGGCCAGAGTCAAATTACTATTTCATCACAGAATGTGGAAAGAAGTGAAGGGCACGCAACCATACACAATGCAATTGCTTTTTCATATTCATGTCTGGACAAACTTGCTTTAATGGAATGTGCCCCTTTTTCAAATTGTGTAAATGAATAAAGACTAGTATTTAAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154286 lncRNA downstream 44956 32547489 ~ 32547707 (-) True G133992
TU154284 lncRNA downstream 46660 32545775 ~ 32546003 (-) True G133990
TU154256 lncRNA downstream 82123 32510155 ~ 32510540 (-) True G133962
TU154254 lncRNA downstream 83290 32509131 ~ 32509373 (-) True G133960
TU153314 lncRNA downstream 133286 32459146 ~ 32459377 (-) True G133118
TU154331 lncRNA upstream 85458 32682610 ~ 32684723 (-) True G134027
TU154327 lncRNA upstream 142749 32739901 ~ 32751578 (-) False LOC110514821
TU154328 lncRNA upstream 142749 32739901 ~ 32752004 (-) False LOC110514821
TU154329 lncRNA upstream 142749 32739901 ~ 32756992 (-) True LOC110514821
TU154429 lncRNA upstream 174111 32771263 ~ 32775483 (-) False LOC110487362
XM_036945823.1 mRNA downstream 86806 32498803 ~ 32505857 (-) True ctsk
XM_021559165.2 mRNA downstream 94669 32489604 ~ 32497994 (-) True LOC110487241
XM_021559115.2 mRNA downstream 150664 32432467 ~ 32441999 (-) False ensab
XM_021559104.2 mRNA downstream 162681 32427587 ~ 32429982 (-) True LOC110487180
XM_021559071.2 mRNA downstream 204781 32374622 ~ 32387882 (-) True LOC110487143
XM_021559238.2 mRNA upstream 35827 32632979 ~ 32636515 (-) False LOC110487305
XM_036945880.1 mRNA upstream 35827 32632979 ~ 32640545 (-) True LOC110487305
XR_005036400.1 mRNA upstream 143601 32740753 ~ 32756866 (-) False LOC110514821
XR_002468227.2 mRNA upstream 173258 32770410 ~ 32775521 (-) False LOC110487362
XM_036945996.1 mRNA upstream 258613 32855765 ~ 32868211 (-) False LOC110487370
TU152378 other downstream 943868 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1049654 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1393851 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 1396943 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 141677 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 141677 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 151056 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 615512 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1268336 33865488 ~ 33865937 (-) True G134668

Expression Profile