RNA id: XM_021559268.2


Basic Information

Item Value
RNA id XM_021559268.2
length 1571
RNA type mRNA
GC content 0.47
exon number 4
gene id isg20l2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32597101 ~ 32605620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCGATTGTTTGGCTGTTAAGGATGTCGGAAGCATGGTGCTATGTTTATAGCAGTGAAGGCCTTTATGTCCAGTTGGAGGGAGTGGGACGTCAACAGTTTTAGTCCAAGAACAAACCTAGTCCCCCCCAGCTGAGGAAGATTCCCCTCCAAGATGTCGGACATGATGTTAAACCTGGACTGTTCTGGCAGCAGAGGGCCCTGTAAAGACTCATCGGGAAGCAACAAACACAAGGCATTCAACAACAGGCGGCGACTCTTGGAGAAAAAGAGTTACCTCAACAAGAAGCAGAACCAGCACAATCATAGACAGGGGAATAAACATCAGGGCCCGCCTCCCTGGGCCAATCGGCCGTCTCAACCCAATGCTGCACACAACAAAAGCTCTGCTCACACTCAGAATACTCACAGTAAAAGTTCATATCACATACCCAGTTCAGAGCATGGCAGAGGTGTTGCTTCCAAGCCTGCATCATCCACAAGCAGCTCAACATCCTTGACCATTACTGTGAAGAATTCTACCAATCCTGAGCAATCCACTTCAACTATCACCCCGGGGCACCAACCCCCACCCACCAGGACTGTTGCCCACTGCGCCCCTGTCCCAAGAGGGTCAGCCCCATTTTGTAACCCCCTGAAGTACCTTGCCATGGACTGTGAGATGGTTGGCACGGGCCCCAAGGGTCGCAACAGTGAGCTAGCACGATGCAGTATTGTCTCCTATGATGGAGACGTGGTGTATGACAGGTACATCAAGCCCACCAACGCAGTCACTGACTACCGGACTCGTTGGAGTGGCATCTCCTGGCATCAACTGGTCAAAGCCATGCCATTTCAACATGCCAGGAAGGAGATTCTGAAGATCCTTGCAGGAAAGGTGGTGATAGGGCATGCTGTCCACAATGACTTCAAGTCCCTAAGTTACAGTCATCCTGCTGTCTTAACGCGGGACACCTCCCGCATTCCTCTCCTCAACCAGAAGGCTGGCTTTCCAGAGAAAGATGTTGCCTCACTGAAAAGACTCACCAAGGCCCTGTTCAACCGCAACATCCAGACTGGGAAGAAGGGGCACTCGTCTGTGGAGGATGCCAAAGCCACCATGGAACTGTACAAAGTTGTGGAGGTGGAGTGGGAGAGGACCTTAGCCTCCAAATAAATTTTTAAAAAGCCAGTGAAAGCCTGTTTTGACTGACCTGGTGAACGTGTTGAGCGATGGTATGGACGTATCATGTTTAACATAATTTTAACATTCAGAAATCACTATCAGGTCTTCCACTTCTCACCTCAGCCACTTTTGTCTCTTTTTCTACTTctgtaaaaaaacacacaaaaaaaacagttgcCTTCAGGGTTGCAGTTGTTTATTTTGTGGTGGATAACCTATGCCACAAGCTGACAGTCCTCTGCCACAAGGGTGCAGTCTATTTTCTCGGTTTAATTAATGAATTCCTAATACAGTActgttatacatttttttttgctttgaaTTGTCTAGAGTTATTTGTTCAGACACTTCTAATTTTATATATTCAATTgttaacataaataaataaattaccaTTGCAAACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153399 lncRNA upstream 51133 32545778 ~ 32545991 (+) True G133185
TU153363 lncRNA upstream 76029 32520810 ~ 32521095 (+) True G133163
TU153357 lncRNA upstream 81917 32515008 ~ 32515207 (+) True G133157
TU153354 lncRNA upstream 84729 32511825 ~ 32512395 (+) True G133154
TU153322 lncRNA upstream 104949 32489653 ~ 32492175 (+) True G133125
TU153548 lncRNA downstream 238631 32844251 ~ 32844534 (+) True G133324
TU153604 lncRNA downstream 375562 32981182 ~ 32982028 (+) True G133374
TU153499 lncRNA downstream 390000 32995620 ~ 32996496 (+) False LOC110487479
TU153489 lncRNA downstream 390971 32996591 ~ 33002008 (+) True LOC110487479
TU153494 lncRNA downstream 405442 33011062 ~ 33012909 (+) True G133272
XM_021559274.2 mRNA upstream 4882 32589189 ~ 32592242 (+) True LOC110487342
XM_021559175.2 mRNA upstream 14575 32569440 ~ 32582549 (+) True tlr18
XM_021559185.2 mRNA upstream 29066 32550907 ~ 32568058 (+) True si:ch211-113g11.6
XM_021559194.2 mRNA upstream 53387 32525732 ~ 32543737 (+) True lingo4b
XM_021559144.2 mRNA upstream 107680 32477650 ~ 32489444 (+) False onecutl
XM_036945871.1 mRNA downstream 2642 32608262 ~ 32632855 (+) False LOC110534753
XM_036945867.1 mRNA downstream 2792 32608412 ~ 32632855 (+) True LOC110534753
NM_001136097.1 mRNA downstream 68028 32673648 ~ 32684724 (+) True rhbg2a
XM_036945920.1 mRNA downstream 169980 32775600 ~ 32852143 (+) False LOC110487398
XM_036945942.1 mRNA downstream 169980 32775600 ~ 32852143 (+) False LOC110487398
TU152486 other upstream 709552 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 714051 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1230802 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1233911 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1304090 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 561818 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 890834 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1208413 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1356797 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2082335 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile