RNA id: XM_036945867.1


Basic Information

Item Value
RNA id XM_036945867.1
length 6139
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110534753
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32608262 ~ 32632855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATCCCCCTTTCTCCATTATCCCGCAAATGGGAAAGTGTTCTTGGTCGGAGGAAGAAAGTGGGCTGTTCAAGATTTTGGTGTGCATAATTCTCTGCCCCCCAATCCCTCTTTACTTTGCTTCCTTCGCTGGCGGACGGAGCTCAAATCGTTATTTAGCTTTTTCAATTCAACGTGGGGAATCCTCGTACCTGACAACTCATTGTCTAATTTCATTCAAATTTGCCGGAAAAATATTTATTAGAAGTTGCACCTGTCGAGTCTGCTTCAAAATACAAAGGTACACAGAAAGGATCGTTTGAGTGCGTCGTTTAAATGAGATTGGAGATGCTCCTGTCTTTGCTGCTGTGTGCCATCTGTCTGCTCATCCTACCGTCCTCCTCTACCCCCAGCCAAGCCTCAGATGACTCCAGACTCCTACAGGTGACCATCCCTACGACCCCTCCCTTATCTGCCGTCTTGGGGGGCTCTCTTACCCTACCTTGCCTGGTGTCTCTGTCCCACCCGCCCCCCAACACGAATGGCCGCCACGCCGTCCTCTCCCTACCCAGGGTCAAGTGGAGCATGCTGTCCCAGGGGCACGAGACTGAGATCCTGGTGGCCCGAGGGGACAGGGTGAAGGTCAGCGAGGCCTACAAGGACAGAGCCTCCCTGCTCCATTACGCTTCCTCCTCGGCCGACCTCACCCTGAGGCTGGATGGCCTGCAGTACAACGACTCTGGCTTCTACCGCTGTGAGGTGCAGCAGGGCCTGGAGGATGCCGACGGTGTGGCTCAGGTCAAGGTCAAAGGGGTGGTGTTCCACTACCGGGATGCTTCCAGTCGCTATGCTTTTACCTTTGCGCAGGCCCGGGACGCCTGTGAAGAGATCGGGGCTCACATCGCCACCCCAGAGCAGCTCTTGGCAGCCTACCACAGTGGCTATGAGCAGTGTGATGCGGGCTGGCTCTCAGACCACTCAGTGAGATATCCCATCCAGATGCCACGAGAGGGATGTTTTGGAGACATGGACGGGCATCCTGGAGTGAGGAACTATGGGCTGCTGGAACCTGATGAGCTGTACGATGTATACTGTTATGTGGAGAACATAGAGGGGGAAGTGTTCCATGGCTCTTCCCCCCGAAGTTTCACCCTGTGGGAAGCTAAGGCCTATTGTCTGGCTCAGGGAGCGGAGCTGGCTACCACAGGTCAGCTGTATGCAGCCTGGAATGACGGACTGAACGCCTGCAGCCCGGGGTGGTTGGCTGATGGGAGTGTACGCTACCCCATTGTCACTCCCAGGGAGCGTTGTGGTGGAGGGGAGCCTGGGGTCAGGACTGTCTATCGCCATTTGAACCAGACAGGCTTTCCAGAGGCACACACTCGCCATGACACTTACTGCTTCCGAGGCAACAGCAACACTCACACCGAATCTCCCCATGATTACCTAGCAACAGAGCCAGAGGACATCGGCCAGGACATTGTGACGCTGTCTGAGCCTCTGGAGGAATTCAGCCTGGGTCAGGTGACGGAGCAGGTGATGAGTGAAGAAGTTCAGGGCTACCTGACTGCACTCCCTATTCCAGCGGAGCAGCACCCATCAGAGCATATAGAGGAGCAGGTGGCTGTCCCTGGAGAGCAGTACCCAGAGCATGGAGCTGTCCCTGGAGAGCAGTACCCAGAGCAGGGGGCTGTCCCTGGGGAGCACGGAGAAGAACAGGGGGTTGTTCCTGGAGAACACGGAGAGGAGCAGGAGGCTGTGCCTGGGCAgcacagagaggaacagggggTTCATCATGGGGAGCAGTACCCAGACCAGcctggagaggagcagggggctGTCGATGGCCCGGGCCCTACTGTAGTCTATCACGAGGAGCTACCCTTTCCGGTTGAACCCCAAGACCCATTCACCCCCACATCCTTCCCCCAAGACCTGGAGCCCACAGAGGACACCTGGCATCTGGTGAAAGAGGTCAGCAACCCAGAATCATATCAGCCTGCCCCTGAGGAGGCAAACTTAGATTCAAACTACCCAGTCACACACTATGATGAGCTGAATGCAAACCCAACACTGTATCCACCTTCTCCCGAGACAAATTATGAATCAGATGATCTTACAACTGCTCATGAAGACAACATTGGTATCCCCGATCTCTACCAGCCCTCGTTAGAGTCAAACATGGAATCAGGAGAGCCCTCTATAGAGGGTGTACCAGGGACTGCTCTGGAGGCCCCCGTGCCCACCACAGCATATGAGGAGGTGGACAGGTCCAGTGATCCACATCCCATTCCTGGCACAACCCCTGAGAGTGGTGAGCCAACAGAGTCTCAGTATGGTATTTCAGAGGAAAGCCATATGCAAACAGAGATCACCCAGGAGACCGAACACTACACTTTTACCTCTGAGACCACAGGCTCTAATGTATCAGGAGTTGAAGCCACTACTAGTTATGACAGCTCTCCAGAGGAGCAACTGGAAAGCAGGCTGCCCATACCTCCTGAGGAGGACCACTCCGGAGATGAGCATGCCATCCAGGTGGAGCATGTCACGGACACGGTCTACCCAAGCACCTCTTATGACCTCTCAGGAGGGTCCTTCAGGCCTGAGGGAGCCATCACTGGGAATGTCGAGGATACATCTGTATCTTCCACTTCACCTCATGAGGAAACGGAGCTCTTCCCTGACCAGTCCACCACTCAGCCTCCATACTGGGAGAACACACCTGAATACCACCAAACCAACTCTGTGGACCACAGTGCCAGTGTCCTTCTCCCTGAGGAGCATACCACATCACTGGACTCATTGGTCCTCCAGACAGGGGAGAACAGTGGCTCTGCTACGGCTGAGTCAGGAGACCTGGCTACCCGAAGCCCAGTGGAGATGGACCCCTATGAACTGATCCCTACCTCTGAATATGCTTATGACCCCACTCAGGAGCAGTCTGGTGTCACGTCACCCGACTCCTCTACCCTAGATGACCATGTGGAGCAGGAGGCAGGAGGCACAGTGGACTCATTACCAGACGTTTCCAATGGTTCCACTGACCAGGATGAGCACACTGACCTGGGTTCAGTTCCAACTGACAAAGTCCTTACAGTTATTTATGACACTGACTCTAGTGAAACCTCTGGGGTCCACAAGGTAATGCTTGACATTACCCTTTTGACATCCCCCATACCTATAACCTATTCCCCCCCGACCCAGCGTTCCGTGGAAGCAGGGGCCAGCTCCCCAGGTGACTTCATAACCGTCATCCCAGAATCCAGCGTTCCATCTGGGTTTGAACCCCTGGAGGAAGGGCTGGAGAAGGTGGAGCAAGAGGGGTTGGGTGAAATCCCAGAAGTAGTCGAAACTACTACTCCAGAGACAGCTTCTGgtgaggaggggagtggagatgaGGAGAATGGTCAGGAggtgagtggagaagaggagagtggtcAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGATGAGGAGAGTGGTCAGGAGGCGAGTGGAGGCAAGGAGAGTGGTCAGGAGGCGAGTGGAGACGAGAAGAGTGGTCAGGAGGCGAATGGAGACGAGAAGAGTGGTCAGGAGGCGAGTGGAGATGAGGAGAGTCGTCAGGAGGCGAGTGGAGGCAAGGAGAGTGGTCAGGAGGCGAGTGGAGGCAAGGAGAGTGGTCAGGAGGCGAGTGGAGATGAGGAGAGTGGTCAGGAGGCGAGTGGAGGCAAGGAGAGTGATCTGAAGGTGAGTGGAGATGAGGACAGTGACCAGGAGGTGAGTGGCCAAGAGGGAGTGGAGTCCGGCCTAGGATCAGGATCAGACGAGGAGCACTCTGAATCTGGAGAAAGCTCAGGGATCCTTGAACCAGAAGTCCCATACATGAATGAAACTGTCATTCCCATCAATAGCACAACTGTCAATAGCACAGATGAAAGCGAGCCTGAGTCGAGCACAGATGCGCCTTCTACTGATATGGAGATCACGCTGCTCTCTGACTTGTCCCAGACCCCCCTGCCCTCCCCCACCATACCCCAAGAGTCCCGGGCTGATGTAAATCTGGATTACAGTGGGGAGACCTCACTCACTGAGGACCCTGACTCCATCACTCCACTCACTAAGGAGCCTGAGGAGACCCCCAGCCCGACGCCCACCACAGAGGACTACGATGACCAGACTACGACGGCAGCACCCCTATATCCAGAGGACGTTGATGAGGAGAAACTGATTACCATTCCTACTACTCCAAGATTTGGGAACATTTCAGATTCCTGCCATGAGAATCCTTGTTATAACGGGGGAACATGTGTTGACAGTGGGTCTTCAACCAAGTGCCTTTGCTTGCACACCTATGGAGGACACATGTGCCAGACAGACCTGGAGGTGTGTGAGCCGGGTTGGGAAAAGTTCATGGGCTTCTGTTACCAACATTTCACCAAGCGTCAGGGCTGGGAGGTGGCAGAGCAGCACTGTCGTATGTGTGGCGGTCACCTGATCTCGGTCATGACCCCTGAGGAACAGAACTACATTAATGATAAGTACAGAGAGTACCAGTGGACGGGACTGAATGACAGAACCATAGAGGGAGACTTCCGCTGGTCTGACGGGAATCCTCTGTTGTATGAGAACTGGTACCGGGGCCAGCCTGACAGTTACTTCCTGTCTGGAGAGGACTGTGTGGTGATGGTATGGCATGATGGGGGGCGCTGGAGCGATGTGCCCTGTAACTACCACCTCTCCTACACCTGCAAGAAGGGCACCTCTTTCTGTGGCCAGCCCCCCATCATTGCCAATGCCAAGGTGTTTGGTAAGTCGCGTCTGCGCTACGAGACCAACTCCAAGGTTCGCTACTACTGTGAAGAAGGATTCCTCCAGACACAGAACCCCGTCATTAAGTGCCTATCCAACGGCCAATGGGAGGAGGCTCTGATCACCTGTCACCCTGCCCAGACCAACTTGGCAGAGGGAGAGCAGAAGGTCACGACGCCACCCTATCAGAACGagggggtggaggtggtggaCACAGCCACGGAGAAAGCCACTTCAGAGTTCTGGGACATCAAGTGGAACTAATAAGCTCATCAAACTCAATATGCCCCTTCCCTCTGCCCCCTTCCCTGGAATCCTATGTTCCACTCAAAGACTGTCCAACCTTGTCCCTCCAACAAGGTGGAGCCTTGTAAAATAAATGTTCTCCCTGAGAACGAGTCATCACATTCCTGTCACCAGCTCTTTCCAGAATAAACCCATTTAGAACATCAACAGACTTGATCGATCACACTTACAATAAGAGTACATCCCAACATAAGGCCACTATTAGAGGAAATTGATCACATTTGCACAGTACAGTTTGTCATTGGAATGAGCTTTAACGAAGATGTCCCATCCATCATTGGGCTTGTATGTTGCGTGTGATTGTTGACTAGTGAAATACTTCAATATCCACCTGTGCTACGACACTGTTGGATGACTGTATTTGACTGCTAGTAACATATATTATGACATGTTTATGATGGTATACAGTATGATTTTGATGGAGAGTTTTAGTAATGTGCAACCTAAATCTCAACCTCAGCTGGTCTGACATTAACTGAAGCCACTTTCCCACTCTCTGCCACAAAGACAGAATTAAGATTTCCACTTTTGTATGCTTTTGTATAAGAAGATCTCCTAATCAATCCACATCTTCTCAATTCCCACAACCCAAAGCATTTTCTCAACATGTCCTCTTATGTGGCTCTTTGCTTTTCAGGTGTCTTAAACTTTAGACCCAATATTAGAAGCCGATATCCACTTTAAAAGTACTTGGTTTGAAAATAGCCAGAATCCAAAGTTTGTTATTTTAAAACGTAATCACTAAGATACTAGGAAGAACATGTGAAAATGTCCACAATGGTATTTCAATTTTCATGCATCAATTACATCATTGTCTTAGTTCCAGTGGAAGTACGATTTTACGTTGGTAGTGTTTAACAGTAATCAAATCGTTCTAATTGTTAATCCCATTTGTGACTGCACAATTACACAATGAACTTGTTATGAAAGAAAAAAGGTCATTGTAAAACGAATTAAAACTTAATTTTGTTAATGTAGTCTGAGTTATTGGAGAATAGAAAATAAATATCTAATAAAACGATTACAATGTATTTATCCATGTGAA

Function

GO: NA

KEGG:

id description
K06795 BCAN; brevican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153373 lncRNA upstream 2813 32599383 ~ 32605599 (+) True isg20l2
TU153399 lncRNA upstream 62421 32545778 ~ 32545991 (+) True G133185
TU153363 lncRNA upstream 87317 32520810 ~ 32521095 (+) True G133163
TU153357 lncRNA upstream 93205 32515008 ~ 32515207 (+) True G133157
TU153354 lncRNA upstream 96017 32511825 ~ 32512395 (+) True G133154
TU153548 lncRNA downstream 211396 32844251 ~ 32844534 (+) True G133324
TU153604 lncRNA downstream 348327 32981182 ~ 32982028 (+) True G133374
TU153499 lncRNA downstream 362765 32995620 ~ 32996496 (+) False LOC110487479
TU153489 lncRNA downstream 363736 32996591 ~ 33002008 (+) True LOC110487479
TU153494 lncRNA downstream 378207 33011062 ~ 33012909 (+) True G133272
XM_021559257.2 mRNA upstream 2792 32597101 ~ 32605620 (+) False isg20l2
XM_021559264.2 mRNA upstream 2792 32597101 ~ 32605620 (+) False isg20l2
XM_021559268.2 mRNA upstream 2792 32597124 ~ 32605620 (+) False isg20l2
XM_021559274.2 mRNA upstream 16170 32589189 ~ 32592242 (+) True LOC110487342
XM_021559175.2 mRNA upstream 25863 32569440 ~ 32582549 (+) True tlr18
NM_001136097.1 mRNA downstream 40793 32673648 ~ 32684724 (+) True rhbg2a
XM_036945920.1 mRNA downstream 142745 32775600 ~ 32852143 (+) False LOC110487398
XM_036945942.1 mRNA downstream 142745 32775600 ~ 32852143 (+) False LOC110487398
XM_036945952.1 mRNA downstream 142745 32775600 ~ 32852143 (+) False LOC110487398
XM_036945896.1 mRNA downstream 142746 32775601 ~ 32852143 (+) False LOC110487398
TU152486 other upstream 720840 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 725339 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1242090 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1245199 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1315378 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 534583 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 863599 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1181178 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1329562 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2055100 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile