RNA id: XM_036945880.1


Basic Information

Item Value
RNA id XM_036945880.1
length 1610
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110487305
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32632979 ~ 32640545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTTTAAGGCTCaaaattaactagctagctaatttagctggTCAATATTTGCCCATGTggggaagttaggctagcaagcatgttagctaggtagcctaggacaacgaAAACTAAAAGCTTACTTACTGTATGACCGAGCCATGGACCGTTTTGCCAACataaaagagaggaggatgacattGGCGTGCAActagtctacaagtaggggagagggagggtgactTGCTTCATTATGAACTGTGCTGCTATTTTGATACTAACCACAAGTTGTTTCAGTTGGACGTCTGCTATTTATCTCCCAAACAGACAAGCAACAAAGAAATTGAAGTATCTGCTTGAGCCACCTGTTTATGCCGAAGTAACCGGCCCTCGGGGAGGAAATGCCACTTTGCCATGTGTACTGCGATTCAAACCAAGCCATTACAAGGTGAAATGGACAAAACTGGAACCACTTCGTCATGGAAACGAGAACATTGTCATGATCACAAACGGTTCAGCCCACAAACCCTATGGCCTGCTTGGGCCACGGGCCTCGCTTCGTAAGGCTCATGCCATGGATGCCTCACTACGACTCAGCAACCTGGAACTAGAAGACGGTGGTAGATATCGCTGTGAGCTGATCAACGGTATCGAGGATGAGAGTGTCATCATTACATTGGGGATAGAAGGGATGGTGTTtccatatcagagcaaaaacggCCGCTACAAATTCACCTACCAGGAAGCTAAGGAGGCCTGTGTTGAACAGGATGGCACATTGGCCACATTCAAGCAGCTATACAGAGCCTGGACAGAGGGTCTGGATTGGTGCAACGCAGGATGGCTCATCGATGGGACAGTCCACTACCCCATCCTGCACCCACGAGCAGAATGTGGGGGGGAGCTGCTGCCTGGAATTCGCAGCTATGGCCCCCGGGACAGGATCCGGAACCACTTTGATGCCTTCTGTTTCACCTCTAGAACCACAGgCTTTGTGTTCTTTGTTGGAGGGCCACTCACGTTTGGGGAGGCAGTGGAGGCGTgcaggggtgagggaggagagttAGCTCTGGTTGGACAGCTCTATTCAGCCTGGCGTTTCCTGAGCTATGACCGCTGTAATGGAGGTTGGTTGAAGGACGGCAGTGTGCGTTTCCCTATCACCACCCCTAGAGAGCGCTGTGGCGGTATTCCCGAGGCTGGGGTGCGCACCTTTGGGTACCCCAGCAAGACCCTGCGTCTCTATGGTGCCTACTGCTACAGGTAGCTTTCATGGGACCCATAGCGTGTGGAACCTACATCCACTGACTTCATAGATCCAAGACGCAGCCATTGTGAAGACTACCAGTGACCCCTACAGGTTTCATTACACTTTTCTGCAATACTACAATATGTTATTACAGGAAACCTCAAAGgtttaacacctttttttcaTGGGACACATCAATAAAAGCCTGCCACTTTTTTGAGCTTTACTGCTACAGGTAACAACTGCTGTACATGTTTCCCTGCGTTTGTGTAACATGCTTTTTGTGATCTTTGTTATCCAAGAAGCACTATTCTAATGTAACAGGAAAGTTATTACACAATGACAAATTCCTAAAATGCTGTTAGCTTCTTATCTGATGT

Function

GO: NA

KEGG:

id description
K06851 HAPLN2; hyaluronan and proteoglycan link protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154286 lncRNA downstream 85272 32547489 ~ 32547707 (-) True G133992
TU154284 lncRNA downstream 86976 32545775 ~ 32546003 (-) True G133990
TU154256 lncRNA downstream 122439 32510155 ~ 32510540 (-) True G133962
TU154254 lncRNA downstream 123606 32509131 ~ 32509373 (-) True G133960
TU153314 lncRNA downstream 173602 32459146 ~ 32459377 (-) True G133118
TU154331 lncRNA upstream 42065 32682610 ~ 32684723 (-) True G134027
TU154327 lncRNA upstream 99356 32739901 ~ 32751578 (-) False LOC110514821
TU154328 lncRNA upstream 99356 32739901 ~ 32752004 (-) False LOC110514821
TU154329 lncRNA upstream 99356 32739901 ~ 32756992 (-) True LOC110514821
TU154429 lncRNA upstream 130718 32771263 ~ 32775483 (-) False LOC110487362
XM_021559218.2 mRNA downstream 35827 32592663 ~ 32597152 (-) True rrnad1
XM_021559212.2 mRNA downstream 35828 32592663 ~ 32597151 (-) False rrnad1
XM_036945823.1 mRNA downstream 127122 32498803 ~ 32505857 (-) True ctsk
XM_021559165.2 mRNA downstream 134985 32489604 ~ 32497994 (-) True LOC110487241
XM_021559115.2 mRNA downstream 190980 32432467 ~ 32441999 (-) False ensab
XR_005036400.1 mRNA upstream 100208 32740753 ~ 32756866 (-) False LOC110514821
XR_002468227.2 mRNA upstream 129865 32770410 ~ 32775521 (-) False LOC110487362
XM_036945996.1 mRNA upstream 215220 32855765 ~ 32868211 (-) False LOC110487370
XM_036946005.1 mRNA upstream 215220 32855765 ~ 32868211 (-) False LOC110487370
XM_036946012.1 mRNA upstream 215220 32855765 ~ 32868211 (-) False LOC110487370
TU152378 other downstream 984184 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1089970 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1434167 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 1437259 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 98284 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 98284 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 107663 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 572119 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1224943 33865488 ~ 33865937 (-) True G134668

Expression Profile