RNA id: TU154326


Basic Information

Item Value
RNA id TU154326
length 2867
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110514821
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32738829 ~ 32756992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTACGCTCCTGAAAGGCATCAAGATCCCCAACACATATCCCCCATAATGCACCACCCCATTCTACCATTCACAGCAAAACAAGCAAAAAAATGGCCGTCATCATAGGACAATGGAAGCAGAAGAAAAAGTCAAACTACCAACACCACCGTGACAGAATGCTGGCAAAATGAGGCTGAAAaacagggagaggatgagaggttgCTGTTGACTCTGACTCCCTCTTCTCGCCCTCCTCCGTATcgcctctccccttctcccctccctcgctTCATCCTCAGCTGCCTTCCCCATTCTCCTGTACCGCGAGACGTAGCCCACGCCACCATCTTAGGACTACGCTCGCTGGCATGAAATGGAAGTGAGGACCAGAGAGAGCAGGCAAATAATGGTCCAGAACACTGATAGAAGGCAGAAAGAACAGCGAGCAGTAATCCATTGGGAGAAGAAAAGTTGCCCACAAACTACCAGCCCATCCCTAGTATGTGCAATGGAACAGGCCCATTACAACAATGTTTGTCCACTATACTCCGACTTGTGCCCCAACATTTGAGCATCAGAGCACTTTAGCTGCCTCTGATGTGTGGTTGGACCTCCAGCCTGGGTTTTGTTATCCAGCAAGGGCCAATCTGGATTGGTTTTGTTTCCTTTCTTAAGCCAATAAGAAAGGGGGTTGGTGGCgtggaaaacaagagcaaatatCTCAGGATCCAAGATGAACAGAGAAGCAGTGATTCTTGGAAACACTGTGCTAGGAATGAGATACATTACATGTGCTGTGTACCTACAGTATTTGCTTGCAGCCTCAATAACAtctacacaaaacattaagaacacctgctctttccatgacagactgaccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcaatcagtgcagatgaagggaaggagacagtttaaagaaggatttttaagccttgagacaattgagacatgtattgtgtatgtgtgccgttcagagggtgaatgggcaagacaaaatatgtaagtgtctttgaacggggcatggtaggtggtgccaggcgcaccggtttgtgtcaagaactgcaacactgctgggtttttcacacttaacagtttcctgtgtgtatcaagaatggtccaccagccaaaggacatccagccaacttgacacaactgtgggaagtattggagtcaacataggccagcatccctgtttaacgcttttcgacaccttgtagagtcccatgCCCAGACTAATTGAGGCtgcaactcaatagtaggaaggtgtccttaaatgttttgtacactcagtgtatgttacaTGTGAGGAAATGTTCCTTGTGATACAGATTCTTAAgtgcaaatatttatataatagcATAGAGCActttactactattactactactttaATTTAAAGTAAATAACAATGTATGAATAGAGTCCATGGTGTTGCATGGGAATGTTGTATAACAAGCTGTATAAATAACATAGACCTACCTAGATCATTATGGTTAGAATTTTAGCCCATTTTtatgtttgttttattatttactAGTTGCTATGACTGACAGATACATGAATGTGAGACCCACGGCAGCAGTGAAGAATACTGCACTGCGATTAGATGGCTCCGTGTGTCATATGACACACAGGCGAATGGGAGAGCTGTTGTCTTTATACTCTATGCAACTGTTTTTGGTACCAAATATATTGGGCAAGCCATCAACTGGATTATTTTTGGGCGAGCAATCTCATGAAATATTATGCTGTTTATTCAGTTTTCTCTCacagtttagtttttttttacactCAATCTGCCaatttaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagatggagagagaaagttaGACATTATAGATGAACATAACACATTTGATTTATAAAACAAATTGTGGAGAGACATTTTAGTTTTAATTTTTCAATAACAGAATTGAATATGCTGGCCCTAAGCCTCTGCCAACGCAAATCAGTGTAGGAATTACACATCTAATATTCTTGATGGCAGAGCTCTGTTTGATCAGCAGTGCGGTTTATAGGGAGTAAGCTAGGCTGCACTGGCAGAACATACTAAACCACTAAAGCTTTCCAAGTAGGCTTTGAATGCAGTAGCCTGGCTTTCCCTAGCAAACCACGTCAGCGTAATACAAGGTACTTTAAAGTAAGACATGATAAATATAGAGATTTCAAAGGCTTCCTTAATTTCCTGTCCTTGACATtatcgcacacacacgcacacacacacaatacatatgTGAGCAAATGCAATAATGCAGGCACTATCATAGACTAgtttgttttatatacattttcagaAAGTGCCATATTTTTATTCCAAATGATAATCTATGCAAATCTTTGAAGTACTTTCTTTAACAATCTATTCGGGTGCTTGTACAATTGAGTTGAGTTGGTCTGAATTTGTAAATGTATTCTTTTGATAATCACAATGCTATAGTATTACTTATCTGCCTGGAGAAGCTtgaaataaaatttaaaacaCTTTTAATATGTTCAACAAATTGTGGTCGCTGAAGTTATTCAATAACGatatgtttcttgttttgttttgcaCCAAGATGAAATGTCTATTCAGATATTTTGAAGCAACCGGTGTTGTTTGTTATATGCAATCTAATATGTATTATGCAATGCTAGAATGCACTGAATGAACCACGTGCCTTTGTATGAAAAACAAACTGTCTTGTCATGGATTAGTAATAAAAGTTTACATtgaaaacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154331 lncRNA downstream 54106 32682610 ~ 32684723 (-) True G134027
TU154286 lncRNA downstream 191122 32547489 ~ 32547707 (-) True G133992
TU154284 lncRNA downstream 192826 32545775 ~ 32546003 (-) True G133990
TU154256 lncRNA downstream 228289 32510155 ~ 32510540 (-) True G133962
TU154254 lncRNA downstream 229456 32509131 ~ 32509373 (-) True G133960
TU154429 lncRNA upstream 19685 32771263 ~ 32775483 (-) False LOC110487362
TU154430 lncRNA upstream 19685 32771263 ~ 32775516 (-) True LOC110487362
TU154483 lncRNA upstream 96084 32847662 ~ 32848177 (-) True G134161
TU154482 lncRNA upstream 96875 32848453 ~ 32852110 (-) True G134160
TU154506 lncRNA upstream 101876 32853454 ~ 32889349 (-) False LOC110487437
XM_036945880.1 mRNA downstream 98284 32632979 ~ 32640545 (-) True LOC110487305
XM_021559238.2 mRNA downstream 102314 32632979 ~ 32636515 (-) False LOC110487305
XM_021559218.2 mRNA downstream 141677 32592663 ~ 32597152 (-) True rrnad1
XM_021559212.2 mRNA downstream 141678 32592663 ~ 32597151 (-) False rrnad1
XM_036945823.1 mRNA downstream 232972 32498803 ~ 32505857 (-) True ctsk
XR_002468227.2 mRNA upstream 18832 32770410 ~ 32775521 (-) False LOC110487362
XM_036945996.1 mRNA upstream 104187 32855765 ~ 32868211 (-) False LOC110487370
XM_036946005.1 mRNA upstream 104187 32855765 ~ 32868211 (-) False LOC110487370
XM_036946012.1 mRNA upstream 104187 32855765 ~ 32868211 (-) False LOC110487370
XM_036946022.1 mRNA upstream 104187 32855765 ~ 32868211 (-) False LOC110487370
TU152378 other downstream 1090034 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1195820 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1540017 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 1543109 31192466 ~ 31195720 (-) False LOC110486852
TU152143 other downstream 1543643 31192466 ~ 31195186 (-) False LOC110486852
TU154709 other upstream 461086 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1113910 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1852637 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2554789 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2922720 35674298 ~ 35675627 (-) False drd2l

Expression Profile