RNA id: XR_002468227.2


Basic Information

Item Value
RNA id XR_002468227.2
length 1476
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110487362
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32770410 ~ 32775521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGACTAATGGTGAGATCATGTGTGAGTGTATCCCTCCGTCTCTTCTGTTTTACTTCCACGTGAAAGGTGTGTGGGTgcagctccctctctctgcagtgacCTGCTGCTCCGCTGCACTTGGCTTCCAAAGCATCCTGTCGGCTGCCTAGCAACACTCAGTGTCCATGGCAACGGAGCCAACAAACCTTCCCACCTCCATCAGCTGTACCCCCCACAATCAGAGCTTGTGGCAATCAGGAGGAGGACTAGAATCCAGTATCTGGGCTATAGTGAACAGGTGGAGTCAAATGTTACAGTGAAGCAATCACCATGTGTTAATACTAGTTGTTTTTTCAGCTAAGACTACCAAACTGCTGAGGGTTCAAAAAGGGTGACAGGTTCTCGAGAACCAGGATGCCCAAATGAGAGACTAGAGGGAGGCCAAGTAATTGCACCAGTGTAGAGTTTCCAAAGTGCAGAGGCTGTATCTGTTATTTTGTAAAGGGAATACAACATAAAAAGTAACTAAGCCAGGGTCAAATGAGTTTTCAACTTTGACCTTCTTGTCTTTCATTCCGATATGAAAAAACTGTAAAAAGTTATGATTGAGATTGTCTTAACAGAAGCCCACCTGAGTTTTCGTTCTGATTAGAGACAGACATGGATGcaaataggcctactgtatacATTAATGTGAACAATACATTAATGGCTTTGGTTAGAGCAGACTCTtctaccctgttcctggagagctactctcctgtaggttttcgctccaattttaacctgattcagtttatcaaccagatAATTATTATTATCAGgatagattagggttggagtgaaaacctacaggacggcaGCTCTCCAGAGACAGGATTGGAAAGCCCTGGGTTAGAGGTAGTGTGCCCCCTCTAGCGGGTATAAGTAAGCATTACACCCAAGTGAAAATTGACAGCAAGGTTGTAGTTCACCTGTTCCACAGATATCATGAATTCACAGTTGACGACTTACACCATTTATGACATTTTTACATTGCTTTGTAACTGGTTTGATATATGATCACATTGAGATGAGGACATGACTGTGTGTGGGCTTAATTAAATTGAATCCACATGTAGGATTTACACACTTGTAAACATGCCTTTTCACCCCTGTTGTTTAGGGTTTGATTGATTCTGGTTCTACACAGTCAGTACATTATGCCTACTCTCTCAGTTGCTGATGTTATTTAAAAGTAACCCATTTTAAAGCAGCTGATGGATATAGAATGGCCATGTAGTGTTACAGTGAATGGAGGCTTAGAGGCCTATTACCATTTAAACAAAGTCTATGAGCCCAtgcattttttttattacaaTGCTAGGATACTGCATGCAAATTAATAGAATGGAAATCGGTATAATTAGGCCAATTTAATTTGACACCAATGTTTTTTGGAATAAACATCATGTAATGGACAAATAAAATCACTTGGTGGCGACCTCTATCAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154329 lncRNA downstream 13418 32739901 ~ 32756992 (-) True LOC110514821
TU154328 lncRNA downstream 18406 32739901 ~ 32752004 (-) False LOC110514821
TU154327 lncRNA downstream 18832 32739901 ~ 32751578 (-) False LOC110514821
TU154331 lncRNA downstream 85687 32682610 ~ 32684723 (-) True G134027
TU154286 lncRNA downstream 222703 32547489 ~ 32547707 (-) True G133992
TU154483 lncRNA upstream 72141 32847662 ~ 32848177 (-) True G134161
TU154482 lncRNA upstream 72932 32848453 ~ 32852110 (-) True G134160
TU154506 lncRNA upstream 77933 32853454 ~ 32889349 (-) False LOC110487437
TU154514 lncRNA upstream 108942 32884463 ~ 32889349 (-) False LOC110487437
TU154510 lncRNA upstream 109049 32884570 ~ 32889349 (-) False LOC110487437
XR_005036400.1 mRNA downstream 13544 32740753 ~ 32756866 (-) False LOC110514821
XM_036945880.1 mRNA downstream 129865 32632979 ~ 32640545 (-) True LOC110487305
XM_021559238.2 mRNA downstream 133895 32632979 ~ 32636515 (-) False LOC110487305
XM_021559218.2 mRNA downstream 173258 32592663 ~ 32597152 (-) True rrnad1
XM_021559212.2 mRNA downstream 173259 32592663 ~ 32597151 (-) False rrnad1
XM_036945996.1 mRNA upstream 80244 32855765 ~ 32868211 (-) False LOC110487370
XM_036946005.1 mRNA upstream 80244 32855765 ~ 32868211 (-) False LOC110487370
XM_036946012.1 mRNA upstream 80244 32855765 ~ 32868211 (-) False LOC110487370
XM_036946022.1 mRNA upstream 80244 32855765 ~ 32868211 (-) False LOC110487370
XM_036946031.1 mRNA upstream 80244 32855765 ~ 32868211 (-) False LOC110487370
TU154326 other downstream 18832 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 18832 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1121615 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1227401 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1571598 31197073 ~ 31198812 (-) True LOC110486868
TU154709 other upstream 437143 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1089967 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1828694 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2530846 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2898777 35674298 ~ 35675627 (-) False drd2l

Expression Profile