RNA id: XM_036945960.1


Basic Information

Item Value
RNA id XM_036945960.1
length 5446
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110487398
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32775600 ~ 32852143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAATATCTCTTGCCTATTGGTCCGGCTAGTGTCAATCATGAAGCAGTGCCAATCAAGATAGATTGGGCAGCAGCAGCAACATTGTATCGTTTGACAGAACTAAATAGTTACCTTGTACATCAAGACGAACGATTTTTCTAAATTTATACTGACGTCGACAGACAGCCTATTAACATAATCTTTATTCCTCAATCAACATTTTAAATACATAGTCATATATTTTTGAATCTCCGGTTTTACCAGACAGATGTGGATACAGTTCTACAGGGAGTAACACACCTGCAGTAAAGAGGGGAAGAGGATCCTAATTCAGAGGACCAGTGGATGACCTGCCTACTGTACAGACCATGATCTGAAGGCCCCGCCACGTGGCTCCATTCTTTCTTCTTCATTATTTCCTGCAGGGGTAAGAGCTCCTTGACTTGCCGCCTCAGACAGGTGGAgcggagggagatagagagagtgtgtaCAAGAAAGAGTGCGACAGCCAAGCACCTACCAACCACCTCCACAGAACAGCCGTGCTCTCTGACCTCGCCACGCCCCCTGCCCCTCCCACCGCCAGACCGGAACCATGGGAAGGAAAAAGATCCAAATACAGAGGATTACAGACGAACggaacagacagGTGACGTTCACCAAGAGGAAGTTTGGCCTGATGAAGAAGGCGTATGAGCTGAGCGTGCTGTGCGACTGTGAGATCGCCCTCATCATCTTCAACCACTCCAACAAGCTGTTCCAGTACGCCAGCACCGACATGGACAAGGTCCTGCTCAAATACACCGAGTACAACGAGCCCCACGAGAGCCGTACCAACGTCGACATCATGGAGGCTCTGAACAAGAAAGAGCACCGGGACTCAGAGAGCCCAGACCCTGAGGAGCCCTTCTCCCTCACCCCCCACACTGAggagaaatacaaaaaaattgaCGAGGAGTTTGATAAAATGATGCAGAGCTATAGGCTGTCAtcagCCGTCCCACAGCCCACTTTCTCCATGCCCGTCACAGTGCCAGTGTCCAATCAGAATGCTCTCCAGTTCAGTAACTCTGGCGGCCTGGTAACCACCTCCTTCGTCACCTCCACCCTCACAGACCCCCGCCTGCTTTCGCCACAGCAACCATCTCTCCAGAGGAACACTGGGTCTCCAGGGTTACCACAGCGACCGGCCAGCGCAGGTGCTCTATTAGGAGGTGAACTGAACAACTCCAATGGAGGATGCCCGAGCCCTGTTCCGAACGGCTACATCAGTGCCAGGGCCTCCCCCGGCCTCCTCTCCGTCTCCAATGGCAACAGCCTGGGGAAAGTAGTCCTGGCCAAGTCTCCACCTCCGCCCAGCCCTCAGATGGTGAACAGCCGCAAGCCTGATCTCCGGGTCATCACCTCCCAGAGCGGCAAGAGCCTGATGCAGCTGACCGATGAGGAGCTGGAGTTGGTGAGTGAGAATGCTCAGAGGTTAGGCGGTTCACAAGGGAACCTGTCCACGCCAGTGATTTCCGTGGCGACGCCCAGTCTCCTAGCCCCCTTCTCCGCCATGCAGACGGCCTACAACACTGaGTACCAGCTGACAAGTGCAGATCTCACAGCGCTCCAGACATTCACACCATCAGGGTTGCTGCCTAGCAACATGTCCACCTGGCAACAGCAACCAGCAGTAtcccagcagcagcaacaacaacagcagcagcaacaacaacaacaacagcagcaacaacaacaacagatcaGCTTGGCGTCACTCAGTAATTTGGTGCCGGTGGGCCACTTACCTCAGGGCACCATGCTGACGATTAACACCAACCCCAACATCAGCATCAAGTCGGAGCCCGTGTCGCCCAACCGCGACCGCAGCACCCCATGCTCAACAGCTGGGGGTGGCGGAGGAGGGGGCCTAGTGACCATCACAGGGGCCCCTATGTCAGGCCAGTACCCAGGGGCCCTGCGCCTGGAGCCGTCCACCCTGCAGGGCCGCTCACCCGTCGGCAGCCTGAGCAGCAACGGCAGCTCCTACGAGGGTGACCGGGACAATGGGGCCCAGGGGCAGGCCCAGGACTTCCACCACCAGGGAGGGGCCTCCTCGGCCATGGGGCTCCTGAGGCCCTCGTCCACTCAGGAGCAGCAGGAGCAGGAGGGGGCCAACGTGAAAAGAATGAGACTGGACACCTGGGTCACATAGATGTGTAGAACAagagagtgaaggggagagatGCACCATCCCACACCCTTTTACCGTATGTACAGTAAATGCTGACCTCACACCCATGCCtccacaacacacaaacacacacacatgcaccggACACGCCCATTTGCGCATGCTCTTATACTCTTGCACACAATCTTTCTCTCACAAATGTATGCATTGACACACAAGCTGCATACTGTTTTACGCTATattgtactacacacacacacacacacacacacacactctcacacaaacaccCTCTATAGGGGCAGAGTTACCGAACCAGGGATTACATGTCAACATAGTGTGTTGGACAAGATTAGGATTGGAATGAATGAGTTCTCTTTTGATCAAGCAGGCTCGGCCTCCTTTTCGTTTTGAAGGGACAGAGAGCAGCTACAAAACTGACTGACTATTGACTGACTAATGACATTGCTGGGTTTTCTCTTCACCCTCTACATCACATAATACACACCTGGTATCCTCCTGTCTTTTATCCACAGTAGGTCTCTAGTCCAGCTGCACTGCTCTGTTGAGAAACAGTAGAACAACCAAAATGAATCCACTTCTTTGTATCTGCCCAGTGGCACTGTTATATCCAGCTTTTGGTGTTTTTGTAAAGAGTATGAGATTGGTGAATGAgattttaacttttttttaatatattgcgtcctctctctgtctgactgttgtcCATCAACCATCTTTAAATTTCTATTAACATTTCTGTTTTAGATTTGAGAACCTGAAATTCACTGAGTCAATCTGATTAGCTATCCATTTTATAAGACAGGATTTACTCTTCTAAAGTGGACGATCCTTGTTTTGTTTAGTTTTAGCCAGGTATTTAATCTGAAACATCGATACCTTATCTAGGTCAAATACTGTTTTATCAGGGAAGGGCTGCACTAGCTCTATGACACATGCTACAGATACCTACCGATCAACTTCAGATGCTGCGTGCGTTTCCTGTTCTGTGATATTTATTTCAAATGctctttttgtgtgttttttttgtgtttttttactACCTTCTTGACTTTTCGATTTTCACCACGCTCAAATCCatccgcacacacacaaaaatatttttgttaaacaatGCCTGTGTTTCAGAAGGCTCTGAATAGGAGATGTAAACTGGGAGAAAAAGTGAAGAACTGTGTATATAAACAATTTGTTCTGTTTCCTTCTGTATGGCTTTTGTATAGCAGGGACATCGTTTTTTGAGGGTAAACATATAGagcatataaatatatatttaaacagCAGCGATAGCAGATTTTGAGAGTAAGTGATGAACTGCATACGATGCAGAGAAAACGATAGACGACAGGGATTGTATATAGAAATATATGTTCACATATGTTCAGCAGGATATCCCTAAAAGCTAATGTGTTGATTCTCAGTGGATCGGGTCTTTCTATTTATGTGTGTACATAAGTGTACTAGGTTGCAAAGCCAGGTGAGGGTGCTAGAGGGACAGAAAAGGAAGTAGCAGTGGATTGGACTGTTTGAGTGAGCAGTGGTTAGTACTCTGATGGAGCGCACTTTAACCCCTTCCTCCCCCCAAGCCCCCAAAATGCCCCCTCTCTTTAAAAGTCAGGTGTCCTCCAGAAAGGGACAGTCATGTCTGCATGTCCTCAGGCACGTCAAACTCattcaacacacacaaacacattttcacacaTTAGCCAGACAAGTATTCCCTGTGCTTTCTGTTAGAGGAGAGTTCCCTGGCCACATGAAGTAATTACAGCATTTCACTCATTGAACCGTAGTGTAAACTCGACCGCTCCCTACCAGTGACTTAAGACAAGTCCATCTCACACTCATTTGACCCCTGCCACTATCAATTTTCTGCCAAAATGCCTCATTgctccacacactcaaacaccgTACTCGCATATACTCTGCACTCCGTCCAGAACAGGTTCAAATGACCTCCCATTGGCTCTTTATCGTTTTATACCGTAGTTGTTGCCGTAGGGATTGTGCAGACTGACTCGTCAGGAGTCTAGACGATCGTCTAGAGgtggatggcagagagagagagtgatcacgCCTGCCGGTATATTCACACACCCTTAGACTGTAAGACTGTTGTGTCCTGAGCTTTGAACAAAACATTGACCCTGatgttttttttataataatgGTAGCCATGTCTTGAATAGGGCCACATGCCATGAAGCGATGTTTCATACCTAGACTAAATGGTGACTAGCGGAAGCAGACGATGGGGTTGGTTAGTACTATGGACGCTGGCCAATCGAGGTGTTGTATAAAGCCCTGACATTATCCCAGAACAACACTAAGGGTCACTGTAATCACAAATGAAAAGACAATTGTCATGACAATAGTTAACCTGCGCCCCCATATTCCCCATATATAATGAATGATGTTTAGAGAATCTCACTTTCCAGTGTTAATTTGTGCTGGTGACAGTTCTATCGTCTGTTTTTATTATAATTGTTCTATGATAATTGCTATTATTACTGTTAATATTATCATTATTGTGACCATCGATGGTAATTGTAATGATGATATAGAAAAGGCAATTTTATTTTTTGCGGTTTTGTGTAGGTTAGGAATCTTGTTTTATttgaattttattttattatatataaatatatttttgttttgttttcattttttCTTTAGTTTTTTCTTCAAAGGGTGTACTAAAATTGCACGATTTATGACGTAAAACAAAACGGCTGTAGTAATATTAGTACATATGAGATCATGAAAGGTGGTAAACAAGTTTAATATAATAACCAGTTCAATGCTGCAATTTTTTGTCAAATGTACAAAACTTAGTCTACAGATAGTAAAGTGAGGACAATTTATTTCTGACCAGACACAAAGATGTCAATGCATGGGCATAACACAAACAAAGAATGAATCCTATTATAGGAAATGCATATGAAATGTAATATCAATAAGAATATACATCACACAGAAATAAAATAGAAATTGAAGAAAAAATTATAGCTAATATATTGTGTTCGGCTAGTCTGCTTTTTGTTGTAAACAAAATgaacttttttgttgtttttggagAATGATATACAATTTGTGTATATTTTCATAAATAAAGTATGCACTGATGTTATTACAAATTCTATACTGCTTTTACAAAAAGTGTTTGTTATTGTACCAAAGTATCCATTTGTCCCTTCTTTACCCTCCCCTTTTTGCGTATGTTTTATGGTATTTTATATATTAAATAGACAAGTTGACCTACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153373 lncRNA upstream 170003 32599383 ~ 32605599 (+) True isg20l2
TU153399 lncRNA upstream 229611 32545778 ~ 32545991 (+) True G133185
TU153363 lncRNA upstream 254507 32520810 ~ 32521095 (+) True G133163
TU153357 lncRNA upstream 260395 32515008 ~ 32515207 (+) True G133157
TU153354 lncRNA upstream 263207 32511825 ~ 32512395 (+) True G133154
TU153604 lncRNA downstream 129039 32981182 ~ 32982028 (+) True G133374
TU153499 lncRNA downstream 143477 32995620 ~ 32996496 (+) False LOC110487479
TU153489 lncRNA downstream 144448 32996591 ~ 33002008 (+) True LOC110487479
TU153494 lncRNA downstream 158919 33011062 ~ 33012909 (+) True G133272
TU153645 lncRNA downstream 229544 33081687 ~ 33081982 (+) True G133415
NM_001136097.1 mRNA upstream 90878 32673648 ~ 32684724 (+) True rhbg2a
XM_036945871.1 mRNA upstream 142747 32608262 ~ 32632855 (+) False LOC110534753
XM_036945867.1 mRNA upstream 142747 32608412 ~ 32632855 (+) True LOC110534753
XM_021559264.2 mRNA upstream 169982 32597101 ~ 32605620 (+) False isg20l2
XM_021559366.2 mRNA downstream 21045 32873188 ~ 32875850 (+) True LOC110487428
XM_036946084.1 mRNA downstream 25758 32877901 ~ 32881216 (+) False LOC110487411
XM_036946079.1 mRNA downstream 25758 32877901 ~ 32882058 (+) True LOC110487411
XM_021559388.2 mRNA downstream 44272 32896415 ~ 32939810 (+) False LOC110487447
XM_036946103.1 mRNA downstream 50373 32902516 ~ 32939810 (+) True LOC110487447
TU152486 other upstream 888030 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 892529 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1409280 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1412389 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1482568 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 315295 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 644311 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 961890 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1110274 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1835812 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile