RNA id: XM_036946067.1


Basic Information

Item Value
RNA id XM_036946067.1
length 7792
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110487370
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32855765 ~ 32868211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTCACACTCCAGGAAGCAAGCAGCCTCACAGCACATTCTGACCATCACACACAGGcttggagagcgagagagagagagaccgaatcAGCACCTCACACACATTGCCAGAACCTGCTCGCTCCAGGGTGAGGAATTCTTTActtaaaaaaaatggaattacTCAACCAGCATTactatctgtcctctctctctgacatggaGCTCCACCGCCTCCGACACCACCACAGCCACCGGACTGACGACAAGCTCCAGATGCTGAACCTCAACCAACGCCTGGAGACCTACCTGGGCCGAGTGAGGCTGCTGGAGGAGGAGAACAAGCTACTATGCCAGGAGATCCAGGCCCTGAGGGGCAGCGGCCAGGGGGGGCGGATGGGCCTGGAGGACAAGCTGAGCCTGGCCAGACAAGAGGTAGAGGAAGTCTGGAGGGAGAAGGATCGGGTGGAGCTGGAGCTAGGGAGCCTGGGTGAAGAGCTCCACGTCCTGGGGCTGCAGAGACAGTGGGAGGCGGACGCCCATGGGGAGGTGAAGAAGAAGCTGGCAGACAGCAGGAagcagatggaggaggagaggagggctcaGATCTGGTTAGGAGAGAAGGTGAGCCAGCTAGAGAAACAAATCCAGTTCCAGATACAAACCCACCAGGAAGATGTTGCCGGCTTCCAGGCTACACTAATCCATGTCAGACCTGCACTGCCACCCCCTCCACCCCAAACGGGCACCCAGCTGCCCAGCCTCCAGGAGCTGGGTGAGGAGTACTCCCAGATGGCTGTCAGGGCGTGGCATGAGGCGGCCATGGTGTTTCAGGGCCAGGTGGACAGCCTGGACGAGtctctaaaccaggccagaacccGGTTGGCCCAGGTGGGCCAGGAGAAGAATGAGAGCCAGCTGAAACTTCAGGCCCTGGAGAATGAGCTGCAATCAGCCCAGGCTAGAAGGCAGTGTCTGGAGAGGAGTGTGGCCAAacagagagacatgcagaggCAAGAGATACAAAACCTGCAGGCCCATCTGGACGTGTTGGAGATGGAGAAGGGGGCGCTGGGAAATCAGATTGACACTCTCCTGACAGAAAGTAGGGGTCTGCTGCAGCTGAAGATGTCTCTGGGCATGGAGGTGGCCACATACAGCGCTTTACTGGACAATGAAAGTCTGAAGGGGGATTTCTCTTCAACAAATCAGCTAAGGAGTACCTACATCTCTGATGGAGTGCCCAGCTCCCGAGGGGTTAAGCAAAGCTTCCAGACACAGCTGCCTACCAGTCACATGATCAGGCCCATCTCTACCATCCATAGAGCAAGCCCACGATCCAATGTGACAATGATGTCCGCATCACCAATCTGGACTCAAAATCGGGTAACCCTGAAAGAAACACCTGAGAGTTGTCGAAAGACAGAAGAGCATATCGACTTTGGGGTAGGGTCCAACTACCAGGTAAGTTGTTCAACGCCTTACCCCAAAGTACCACAGGACGGAATTTCAGTCGACCACTTCAGACCCCAAGATGTCCATAAAGAAGTCAACTATGCTGAGCCTCTCTCACCTCCCACTGAAGAGGCAGGAGCTGATGTTGTATCTTTGCTTGGATCTGACCACAAGGAACAATCCATGTGGGATAtggaaaaggaggaagaggatcaGAACATAGTCAGAACCTGGTTTGCTGAAGAGAAACCCGTTCTGGAATCTGCCATGAGTCACCGGGTCGAGACCAGCTTCAGTATGCCAACTGTGTTCAGCACTGATGCTCAAGAGCTCTACAGCCCTTCAGTGAGCTATGAGAGAGCAGGTTCGGTGACAGGGGCACATTCTGCTTTCTCAGCGAATGATGATAATGATGTACCTTTTGAAATATCTTTTGAAAAAGAGGAACCTCTACTAGATATGCCTTACGGTCCCATGAATGCATCAAAGGAAAGAGATCTTGAAACAACAAAGAAAGATGCTGAATGGGCGGGAAATGAAGGCTTGGAATCTGAAACTGCATCAGTGCTAGAACAAGCATTTGAGACCTTCACAAGCAGTCAAGCTTTTGAGTATGGGGCGGGGAAAAGTTACAACAAGTCAATAGAGCTCAACCAAGAGGACAATATGTCATATGAATCTACTCAAGCCTCCCACGGTTCAGAAGAGGCATTTCGCCATGTTAAAAGACTGGAGGAAGATGTTATTCATCTCCCAAAAGAGGATGAAAATGATATGTCTAACAAACATGAGGAGCAATTGGAAGATGAATTGCACCCCTATGGGTATGGTAAGGATGATCGTGAAAGATTAGGAGGATTCATTAAGGAAAATGATATGACAGAAAGAATCGATAAGTTCAACCAAGAGGAGATGATCTCATCTGAATCTGCTCAAGCTTCTCACAGGTCAGAAGAGGTATTTCACCATGTTGAAAGAGTGGAGGAAGGTGACATAAATTTCACAAAAGTGGATGATGAAAATGATATGTCTAACAAACGTGAGGAACAACATGCACTGAACCCCAATGGGGATGTAAAGGATGAATGGGATAGAGTGAGAGGGTACAATGAAGAGAATGGAATTGGAGAAAGAATGGATGATTGGAAAGACGGAAAGTATCATATGAAAGAGGAAGAGATGTGGAATAACAGAGAAGCCCAACCCAATCGGTCTGATCAAGAATATATACCTTCAAATGAAGAGAAACTAAATCAATTCGAGCAAGAGCAAATACCTTCAGGCAGAGAGAAACTGAATCAGTCTGAGACAGAGCAAATACATTCAGGCAGAGAGAAACTGAATCAGTCTGAGACAGAGCATATACCTTCAGGCAGAGAGAAACTGAATCAGTCTGAGCAAGAGCAAATACCTTCAGGCGGAGAGAAACTGAATCAGTCTGAGACAGAGCAAATACCTTCAGGCAGAGAGAAACTGAATCAGTCTGAGCAAGAGCAAATACCTTCAGGCAGAGAGAAACTGAATCAGTCTGAGCAAAGGTATATCAATTCAAACGGAGAGAAACTGAATCAGTCTGAACAAGAGCAAATACCTTCAGGCAGAGAGAAACTGAATCAGTCTGAGCAAAGGTATATCAATTCAAACGGAGAGAAACTGAATCAGTCTGAACAAGAGCAAATACCTTCAGGCAGAGAGAAACTGAATCAGTCTGAGCAAAGGTATATCAATTCAAACGGAGAGAAACTGAATCAGTCTGAGCAAGAGCATATACCTTCAGGCGGAGAGAAACTAAATATATCCGACAATGACAAAGAGGATCATGATGAGGCAAACTACTGTCAAAATAATTCTGTATCATGGAGGGCTGAGCTAGAAGGCGACAGCTATGCTCAGGACAACACACTAGCCGACACACACCCCTTGATCCGTTACAAGAGTGACGAGACAGATGTCAACACTCAGGCTTCACACATGGGCGAGAGTGACTCCAGTGATGGTGAAGAGGACAGGGAGGTTTGCCAGACAGGAACAGACACCTGGGGCGAAGGCAAGTCCAAACAGTTTGACACCATGGAATATCTGTATGAAGAGTCAGAAGGGGATGTCATAGATCAGGAAAGTAACATGGGCTCCACTCACCAAGAGGACATGGATGCTAGCCAAACAAAGGAGCATGCTCCACAGGAGAACGATGAGGAGAATGCTGTAGATCAGTTGATTCAGGAGGCAGAAGAGGAGCAATCCTATGAGGAACTTACAGAACCTGGAGAGTACTCCATGGTGTGCTCTGATGAGGACTATAATGAAGAAAGAATTGATAGATTGGTGGAGCAAGAGCTAGAGAATTTATCTATATCCAGTTACAGTGAACACTTTACTGGGCAGATGATTGAGAGCGAGTCAGTACTGAGTCTTCAAATTGAGTCTCACACTGAACTTCCCCAGACACAAGACATATTATACAGTGAGGAGGTAGTGCAGATACACTCAGAGAGACTGAATCAATCTGAGCAAGAGTATATACcctcaggaggagagagactgaatcAACCTGAGCAAGAGTATATACACTCAGAGAGACTGAATCAACCTGAGCAAGAGTATATACACTCAGAGAGACTGAATCAATCTGAACAAGAGTATATACCCTCAGAGAGACTGAATCAACCTGAGCAAGAGTATATACCCTCAGAGAGACTGAATCAACCTGAGCAAGAGTATATACCCTCAGAGAGACTGAATCAACCTGAGCAAGAGTATATACCCTCAGAGAGACTGAATCAACCTGAGCAAGAGTATTTACCCTCAGAGAGACTGAATCAACCTGAGCAAGTGTATATACCCTCAGAGAGACTGAATCAACCTGAGCAAGAGTATATACCCTCAGAGAGACTGAATCAACCTGAGCAAGAGTATTTACCCTCAGAGAGACTGAATCAACCTGAGCAAGTGTATATACCCTCAGGCGGTGAGAGACTGAATCAATCTGAACAAGAGTATATACCCTCAGGCGGAGAGAGACTGAATCAATCTGAACAAGAGTATATACCCTCAGGCGGAGAGAGACTGAATCAATCTGAACAAGAGTATATACCCTCAGGCGGAGAGAAACTGAATCTATCTGTGCAAGAACACATACCATCAGATGGAGAGAATCTGAATCAATCTGAACAAGAGAAGATACCTTCAGGAGGAGAGAAACTGAATCAATCCGAGACAGAGGATATAACTTCAGGCGGAGAGAAACTGAATCAATCCGAGACAGAGGATATAACTTCAGGTGGAGAGAAACTGAATCAATCCGAGACAGAGGATATAACTTCAGGTGGAGAGAGACTGAATCAATCCGAACCAGAGGATATAACTTCAGGTGGAGAGAAACTGAATCAATCCGAGACAGAGGATATACCTTCAGGTGGAGAGAAACTGAATCAATCCGAGACAGAGGATATAACTTCAGGAGGAGAGAAACTGAATCAATCCGAGACAGAGGATATACCTTCAGGCGGAGAGAAACTGAATCAATCCGAGACAGAGGATATAACTTCAGGCGGAGAGAAACTGAATCAATCTGAGACAGAGGATATACCTTCAGGCGGAGAGACACTGGATATATGTGAGCAAGAACATATACCCTCAGATGGAGAGAAAATGTATCAATCCGAGCCAGAGCATTTACCTTCAATCAGAGAGAAACTGAATCAATCTGGGCAAGAAAATATACCTTTCGGTGGAGAGAAAATTAATCAATCCGAGCCCGAGTATATACCTTCAGGTGGAGAGAAAATGTATCAATCTGAACAAGAGAAGATACCTTCAGGAGGAGAGAAACTAAATCAATCTGAGCCAGAGTATATAACTTCAGATGGAGAGAAAATGTATCAATCCGAGCCAGAGCATTTACCTTCAAACGGAGAGAAACTAAATCAATCTGAACAAGAGTATATAACTTCAGGCGGAGAGAAACAGAACGTAAATGCACAAGAACACATACCAACAGACGGAGAGAAAATGAATCAATCTGAGTCAGAGTATATACCTTCAGGTGGAGAGAAACTGAATCTATATGTGCAAGAACACATACCATCAGACGGAGAGAAACTGAATCAATCTGAACAAGAGGATATAACTTCAGGCGGAGAGACACTGGATATATGTGAGCAAGAACATATACCCTCAGATGGAGAGAAAATGAATCAATCTGAGTCCGAGTATATACCTTCAGGTGGAGAGAAACTGAATCAGTCTGAGCAAGAGTGTATACCTTCAGGTGCAGAGAAACGGAATCAGTCTGAGCAAGAGCATATACCTTCAGGTGGAGAGAAACTGAATCAGTCTGAGCAAGAGCATATACCTTCAGGTGCAGAGAAACTGAATCAGTCTGAGCAAGAGCATATACCTTCAGGTGGAGAGAAACTGAATCAGTCTGAGCAAGAGTGTATACCTTCAGGTGGAGAGAAACTGAATCAGTCTGAACAAGAGCGTATACCTCCAGGTGCAGAGAAACTGAATCAGTCTGAACAAGAGTGTATTTCCTCAGAGGTTATGTATTCGGTGCACTCTAGGATTCTAATGACATCTGATCACACATCTCTTAGAGAAGGTTCAGTAGAAATATCCAAAGAAGAATATTTGGCTCAAGGTAAGGTATTCAGTGGGGGACTGGGAACTGAAGCTGTACCAGACAAAATAGAAGGACAGGATGACCAGAACCTTTATATGTCGACTCATGCAGACTTCACTGAAAGCCATTCTATCTACAGCAGTTTAAACAGCAGGCCTGAGAGTCAAACCGACATGAACAACTTGGATATAGAAGAGTCCAACAGCACAGATGATGAGTCACCAAATGCAAGCCAGTATTTGCAACCTGTCACCAAAGCAAATCTAACTGCAGATCAGGAAGACTTGTTAAATGTGGCAGTCTCTCACTATGAGGATTGCAATACTCTTATTGAACATTCTGCAGAAGAGGTCACTAGCTATCAGGCAAGTAATGAATGTCTTCAGACAGATGAATGGGAAGTCTTAGAAAGTCCAAACAAACACCTGGAATCTGGAGATCCTTTTGCAGGTCACAAGAGAGACTCCGAGAGATCATCCAAAACTGACAGCGAAGGCCAGGACCTCCACAGCTTCCTCAGCTCTGGTGTACACAACAACTTCTGGGGTTCCAATCTGGAGACAGGAGCCCCCTATCAACCGGATGAGACATATGACCATGTGACCGAGCTACCCAATCAGAACCTAGTCTTGGCTAACAACCTATCCTGGGTGGATTTGGATAATCCACAGGCAACTAATTGGAACACAAAGATGGACAGCGACACACCTGAAGCTTCCACCCTTGAAGAAGAGGACAAACAGATGCCCTCACAGGTGAAGCAGCTGGTTTGTAAAGATGTGGTAGAGGGTGTGAATGTTACTTCTGAAGGTTCTGAAGATGGAGACTCCTGGTCATCTGGGGAAGAATAGGAACAATTTCAGCATGGTTTCTATAAAGGAGAAAAGTAGAAGTAACAAGTGTTACTGAGAGTGTAAAACTATTTACATTTTACAGGCTTTGAATTTGAGCATTGATTCACATTGATCCTCACAGTGGAAAGTAAATGAAACGATAATTTCATCCAAACATGAATGTACTATGTCACAGAATGTCATGACAATTCAGTGCTctccgggatccttgggatgtccctaccctaaaccctaactatAACCATAATCCTTACCTACACCAtttaaaatgtcaacttcaatggggtagggacgtcccaaggatgcGAGATAGCACAGACCGTCAAATATTTATGCTGTTTTCAAAAACCAAAAAGTTGTGCTTGTGGCACTAACCACCAGTGTACCTACTCCATTTCAAGACATTGAGGGCCATTTTTTGTAAGTTTTACAAATTGATGTTTGAATAGCATTTCTTTATTTTGCCTCCCCCCTTTGAAGAACAAAAGTAACTTAATTAAAAACCAAAGAAAGGACATTTGAAAGTCAAAGCATTCTGAACTGCCATTAATTGATAGTTGATTTGATTGCACTGATTGAAGGAAATCAATTAGAGCAAAAGTGAGAACCAAGGCCTGGGAGCTTGTTTTTTCTAGCAGCAACTGTTATCTTAACATCTTAAGTCCATTTGATAAGGACTCCAGctgtgccttcagaaggtattcatacccctttgaCTTACTCCATTGAAGAGTTATTTATGATTATCATTTGATATTTCAACTCACACACTACaagcagcaaatcaaatcaaattgtattagtcacatgcgccgaatacaaccagtttagaccttacagtgaaatgcttacttacgagcccctaactgacagtgcagtt

Function

GO: NA

KEGG:

id description
K07609 NES; nestin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154482 lncRNA downstream 3655 32848453 ~ 32852110 (-) True G134160
TU154483 lncRNA downstream 7588 32847662 ~ 32848177 (-) True G134161
TU154430 lncRNA downstream 80249 32771263 ~ 32775516 (-) True LOC110487362
TU154429 lncRNA downstream 80282 32771263 ~ 32775483 (-) False LOC110487362
TU154329 lncRNA downstream 98773 32739901 ~ 32756992 (-) True LOC110514821
TU154514 lncRNA upstream 16252 32884463 ~ 32889349 (-) False LOC110487437
TU154510 lncRNA upstream 16359 32884570 ~ 32889349 (-) False LOC110487437
TU154511 lncRNA upstream 16359 32884570 ~ 32889349 (-) False LOC110487437
TU154504 lncRNA upstream 16505 32884716 ~ 32889349 (-) True LOC110487437
TU154528 lncRNA upstream 23504 32891715 ~ 32891916 (-) True G134182
XR_002468227.2 mRNA downstream 80244 32770410 ~ 32775521 (-) False LOC110487362
XR_005036400.1 mRNA downstream 98899 32740753 ~ 32756866 (-) False LOC110514821
XM_036945880.1 mRNA downstream 215220 32632979 ~ 32640545 (-) True LOC110487305
XM_021559238.2 mRNA downstream 219250 32632979 ~ 32636515 (-) False LOC110487305
XM_021559218.2 mRNA downstream 258613 32592663 ~ 32597152 (-) True rrnad1
XR_005036431.1 mRNA upstream 16197 32884408 ~ 32889385 (-) False LOC110487437
XM_021559400.2 mRNA upstream 70836 32939047 ~ 32963094 (-) False LOC110487461
XM_021559405.2 mRNA upstream 73181 32941392 ~ 32962673 (-) False LOC110487461
XM_036946113.1 mRNA upstream 73181 32941392 ~ 32968489 (-) True LOC110487461
XM_036946207.1 mRNA upstream 133918 33002129 ~ 33010958 (-) True LOC110487493
TU154412 other downstream 67644 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 104187 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 104187 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1206970 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1312756 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 344453 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 997277 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1736004 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2438156 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2806087 35674298 ~ 35675627 (-) False drd2l

Expression Profile