RNA id: TU154506


Basic Information

Item Value
RNA id TU154506
length 4033
lncRNA type read_through
GC content 0.41
exon number 2
gene id LOC110487437
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32853454 ~ 32889385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAAGTAATTAGTTCCATTACTCCGGTCGTTGTTTATGATTTCATTTCCAGCCCTTATTAGCACAGTAACGTTAATGACTTGCATTCAAGTGTAAATGTTCTCTTAAAactacctagctaacgttactatTGTTAGATTACGTTAGCTAAACCCAAACTGAACTTTGACTGagcagtattttttattttttttgcagacTTCCAAACGGAAATGTGTATATTATATTTGAGAAAATCGTGTATTCTTTGTGCATTACTGTTCAACTATCTAATTAATACATAAATGTTGACACCTGAGACTGAAGACCTGCCAAATGCAGTGTAATATAGCTAACATATTCATTTATTTGGAAGTAAATGGCAGAAACTGTTAAGGGAAAGAGCCGTGGACTGAAGTTTGCAGAGCAACCACTACtgtttcagtatgatatgttggataaaggaataaagacagacaccaatgtCAGGTTCAATAGCCTTGTTTGTGCATTGTACAAATCCCTACACATGGAGTCCGGGGAACAGTCCGGCTAGTCGAATACCTATCAACTTGACTCCGTGTTAGATTTTCAGAAATATATTTAGTAACAGTATAGTCAATTAATGATAGACAATCTGTTAGCTAATGAACATCGATTACGGGCAGGAGTttctcaaatcaaagtttatttgtcacgtgcaaccttacagtgaaatgcttacttacagtgcAATTTCTAAGTTAAAaaaggtgaacaataggtaagtaaagaaataaaaacaacagtgaaaataacagtagcaatgATAATATATCAAGTGTAACGTTATACATATGTCAGCTTTAACTTGCTTGTAAATTACATTAGTAGGCAGAGCTATTTTGGTGATTTTATGGTATATCATCAAAAAATAAATCCATCACAGCACGTTTTTGGACTCATTCAGcagtttttttaaaatttttttttaccagattTAAGTACAATACCATTGGAATTTAATGTTGAAAGTTAAATTTATATTCCTAAAACGTGTGTTAAATGATGCTGGCACTGCTTCCTTTCCACAAGCCATTTGGATAAATAGCCCAATGTCAAAACAGTTTTAACGTGGCCAAATCAATACCAAATATGCAGAAACAGTGTATCTTGAAAACCTAAACATAAAATGTACTATCATACATGTGCAACAATTAGTAATCATATTACTTGTATTTTTTTATGCACCATAAACCCTGGTTTGACTGGTGGCAATACATCATTGATATCGATTAGGGGGGAAATCGGGTACGCCCTGTTGAAACTAAAAACACTGGAGATATTTTTACATCACCTGTAGAAGACAGTGGGCTACATTGGGGTGATGCATTTTGATTTGAGGGTTGCCTAAACAGAAAAAGAAACCCAACACATTTGTCAATCACTCGTATCGAAAACCACATggaataatgtgtacatcactgAGGACAATTTTGTAGGAGACTGCTAGCTACAATTTTTGAACAGGGGGCAAACGTTTGGAGTGTAGCGCTGTTTAAACTAACACTATTCAAAGGCCACACAGAATCCTGGAATAACCTGTATATGGTTGGTTAGATGAGAACTTGTAGAAGGCTGATATCTATATTTTGGAATGTCGGACGTTGATTTCCCGAAGCTGCATCACAAAAAAGGGAACAAACCACTCTGTTAACCCAAATGTTGTGATTTGTTTAAGTTATCACGACCCATAGGATATCAACAGTGATGATGGTTGGCTGATATTTAAGTGATAGTTTGATTgtcatagagagagactgacccAAATTTTTCGTGCCATTTCATTAATCCCAGCACGTGTGTACAAAACGTGAGTACAAAACCAAATATATTGATATGTTTTAAGTAATCAATCTTATGTCATCGTGATGACTATATTCTTTTACACTAACATCACCAATCTGAGGTAAAAGGATATGTAATTCCactaaataaactcagcaaaaaaaagagaagtccctttttcaggacccggtctttcaaagataatttgtaaaaatccaaataacttcacagatcttcattggaaagggtttaaacatggtttcccatgcttgttcattgaaccataaacaattgatGAACATGCACCTTTGGAACGGTCATTAATTAAGACccaaacagcttacagacggtaggcaattaaggtcacagttatgaaaacgtaggacactaaagaggcctttctactgactctggaaaaacaccaaaagaaagatgccctgggtccctgctcatctgcatgaacgtgccttaggcccTTAggcagggcaataaattgcaatgtccgtactgtgagaagcctaagacagccctcgcagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatgccaacaacaactgccagagttacaccaggaacgcacaatccctctatcagtgctcagactgtccacaatagtctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacatcaccggcaacaacgtcgcctatgggcgccaacccaccgtcgctggaccagacaggactggcgaaaattgctcttcactgacgagtcgtagTTTTGTCTCTTTGGGGGTGGTgatcggattcacgtttatcatcaaaggaatgagcgttacaccgagccCTGTACTCTGGtacgggatcaatttggaggtggagggtccttcgtggtctggggcagtgtgtcacagcatcattggactgagcttgtcatcattgtaggcaatctcaatgctgtgcgttaaaGGGAAAGATGTCctactccctcatgtggtacccctcctgcaggctcatcctgacatgaccctctagcatgacaatgccaccagccatactgctcgttctgtgcgtgatttcctgcaagacaggaatgttagtgttctgccatggccaccgaagagcccggatctcaatcccattgagcacgtctgggacctgttgaacCGGATGGGAGGGTGAGTGCTAGAGCCatccccccccccagaaatgtccgggaacttgcaggtgacttggtggaagagtggggtaacatctcacagcaagacctggcaaatctggtgcagtccacgaggaggagattcactgcagtacttaatgcagctggtggccacaccagataccgactgttacttttgattttgacccccccccccccccccccgttcagggacacattattcaatttctgtggaacttgttcagtttgtctcagttgttgaatcttgttatgttcatacaaatatttacacatgttaggtTTACTCAAAATGAACGCAGTTGacagaggacgtttcttttttttgccgagtttattATAGGTTGAAAATGCAAGCTTGTAAGGTATTAACAAAATGTCCACATTAGGGAAATGAGCGCAATATTCAATATGgcaaaataatgaaacatgtcaaTTTAAGATGATTGTGTCAAACTATTGCAACAATGACATCTATTTCTCACTAATTTAATGATTTAGTGTTAAAAAAATGCTCTCAAACAATTACATTGGGCGTTCTAGACTAGAGCCTATGTCTGTGCAGTAGACGGAATGTTTGCTGTCCCTACTAGTAGTAGTTGCCAGTTGTATCTTATTCTGTGTTATGAAAGGTAACTAGGTCTAATGTTCTAAGTCTACCACTAATAGAAGACCCCTCACTGTTCACAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGGTAAGTCCTCAGAAGGGGTGTGTGAAATGAAAGAGTATTTtaccactaccacacacacacacacacacacacacacacgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154482 lncRNA downstream 1344 32848453 ~ 32852110 (-) True G134160
TU154483 lncRNA downstream 5277 32847662 ~ 32848177 (-) True G134161
TU154430 lncRNA downstream 77938 32771263 ~ 32775516 (-) True LOC110487362
TU154429 lncRNA downstream 77971 32771263 ~ 32775483 (-) False LOC110487362
TU154329 lncRNA downstream 96462 32739901 ~ 32756992 (-) True LOC110514821
TU154528 lncRNA upstream 2366 32891715 ~ 32891916 (-) True G134182
TU154608 lncRNA upstream 91707 32981056 ~ 32982279 (-) True G134253
TU154609 lncRNA upstream 92087 32981436 ~ 32981888 (-) True G134254
TU154584 lncRNA upstream 105028 32994377 ~ 33001917 (-) True G134229
TU154581 lncRNA upstream 141900 33031249 ~ 33049288 (-) False G134227
XR_002468227.2 mRNA downstream 77933 32770410 ~ 32775521 (-) False LOC110487362
XR_005036400.1 mRNA downstream 96588 32740753 ~ 32756866 (-) False LOC110514821
XM_036945880.1 mRNA downstream 212909 32632979 ~ 32640545 (-) True LOC110487305
XM_021559238.2 mRNA downstream 216939 32632979 ~ 32636515 (-) False LOC110487305
XM_021559218.2 mRNA downstream 256302 32592663 ~ 32597152 (-) True rrnad1
XM_021559400.2 mRNA upstream 49698 32939047 ~ 32963094 (-) False LOC110487461
XM_021559405.2 mRNA upstream 52043 32941392 ~ 32962673 (-) False LOC110487461
XM_036946113.1 mRNA upstream 52043 32941392 ~ 32968489 (-) True LOC110487461
XM_036946207.1 mRNA upstream 112780 33002129 ~ 33010958 (-) True LOC110487493
XM_021559423.2 mRNA upstream 123018 33012367 ~ 33018172 (-) True LOC110487486
TU154412 other downstream 65333 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 101876 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 101876 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1204659 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1310445 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 323315 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 976139 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1714866 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2417018 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2784949 35674298 ~ 35675627 (-) False drd2l

Expression Profile