RNA id: XM_021559400.2


Basic Information

Item Value
RNA id XM_021559400.2
length 4634
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110487461
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32939047 ~ 32968489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cGATACATGTGCAGGGAGAGACTGTGACGCAGCCATTCCAGAGCGTGAGCCAAAGGCACACAGACAGCACTGATCCTCCTCCCTATACTCCACAGGGGCACCTCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCACACAGGTCCggctgtgcagacacacacactgctccacCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCCCAGCCAACCACCTGAACCACCTGCTGGATGTCCACTATGGAATCTCCGGGTCAGAAACGAGCCAGCCGCGGTGGGACTGCCACCCCACTCTCCCCAACCCGCATCTCTCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATTGACAAGGTGCGTTCGCTGGAGATAGAGAATGCTGGGCTGCGGCTGCGCATCACCGAGTCCGAGACCGAGATCAGCCGTGAGGTGACAGGCATGAAGGTGGCCTATGAGACGGAGCTTGCCGACGCCCGCAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGCAAAGTCAAGGAGGATTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCAGACCTAGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTTTGTCCACTGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTAAAGGCCCAGCTAGCCAAGCTGGAGACAGGTCTGAGCGATGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCCTCAAGGAAGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCTGAGGCCCTGATGGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTATAAGGAGGAGATCGAGAAGACCTACACCTCCAAGcTGGAGAACGCCCGTCACTCCGCAGACAGGAACAGTACCCTGGTGGGGGCGGCTCACGAGGAGCTGCAGCAGACCCGCGTGCGGATGGAGGGCATGTCCTCCCAGCTCAGCCAGCTGCAGAAACAGCTGGCGGCGAGGGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGGGACACGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTATCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCCAACCCGAGTCACTGTGTCCCGTACCACCGGCTCGGGCTCAGCACACACCCATACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGCCCGAGTGGTCCAGTCCACCAGCGGCAGCCGCAACTCCTCAGGCACGGCTAGCGCCAAGAAGAGACGGCTCCATGACAACGACAGCGAGACCTCCAGCCTGGCGGGGGGCGCCGTGACGCGTACACGCATTGCCCAGCAGGCCTCCGCTAGCGGCCGTGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTACGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCACCAGCACCCCCATCGTCTACAAGTTCCCCCCCAAATTCAACCTCAAGGCAGGACAGACCGTCACAATTTGGGCTTCAGGAGCAGGCGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCATCCTGGTCAGCGCCAATGGAGAGGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCATGTGGCCAGCCGTCTGACAAGAGCTGTGCCACCTCAGGGGTGTCCAGTGGCTCCTGCTCCATCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCCCTCTTTATAATGGGTAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAAAGCCAGGCAGGCACCAGCTTACCTGGACAAGTACCTCCCACACATGGATGGGAGACgtctttttttaaattacttttttatttcctttgtttgaTGTATGATCTGTCTTATTTTGTATGACATAATCTGCAGGTTAGATTGCCTTTGGTGTTTGGCAAAGGGCTTAGGAGCTGTATATTCACTTCAGATATATGAGCTTGTATATTCGAGTTATTGCATGTGGGCTGGGCAGATGCTTTCACTGTTTAGGGCCATATCTAGGGAGAGAGGCACAGAAAGCACCTTTAACCATTACAGTGGACTTTGATCCATAGTGGGCTTTTGCGTCATGTCTAAACTGTCACAACACTAAACACGCACAGCAGCAAACCCTGCTATGAATCAGTGGATATGGGGGCTGGAACCAGGGATCTCTGGCCTGGTATTCCAAATACACTACCATAGAATGTCCTGAATGTCACTAAATGGAGATGGAGTGAACCCCCTCTGACAGCGAGAGGATTATGGGGGTTTGTATTAGACTGAGCGATGGGATTGGTCATTCTAAAGCCATAGTTACAACTTGACTACAACTCAAACTTGACACTGTCATCAAGTGGTTTATATTTCTGAACACAAGACAGTCGTTTTTATGGAATGACATCTATATTATTACTGATGAAACAACCAGACAACTATGGTAATATGGATATAGGTTCCAAATTGTGACTTGTTTTCACAGGCTTGAAAGAGGTATGTAGTTGTTAAAGAAAGGATACCAAAACGAGATGAGCACACAGATATGGGGAAGACAAAGTAGTACTGTATTGTAAAGTTGAGTACGGTCTTgacatgacctctgacctccagAAATAGTTTCCTCTTAGAGGCTGATAATTCTTGTCTGACCTTTGTCTTGTATGACAAAACAGTTATGCCACGCTTTTTTTGTTTACGTAGTTATACTGTAGGGCAACTCATCAGATCTAGacaaaaaaatatgatttgtAGGGATTATTTTGCTTTTTTGAATCTGAGATAATTGCCAGATGGATTATAGTAATGTTACTGTAACCTTCTAATATTGACCTTCCATTTTTAGGTTTGAGGGAATGTGGCAGCTTGAGAAATAGATGTTCTGGTTTGTCAGACTCTAAAGACAGAAATCGTCTGATTTGGAAGTGTGTTGATTTTAAATGAAAGTACAATGCTTACCTTCTCGTGACAGCAGTGCAACAATGTGTACATTCTGTAACTTTGTTTGTATCAGGTGTAGTGTCAGAAAGAATGGGTACAGATAGAAAGTAAACCTTGGACAAGTAAGCCTGAGCCTGAATGGCCCGTAGGGGTAGTTGGACTATATGGTATTATCTGGCCAAAAGTTGACTTTATTTATGAACTACACAATATGTTGCATTGGCAAACATGTTGGTGCCATATTTTCAGTGTAATCAATTATCAAGGTGTCACTTTGACAAGGTCAGAAAGAGTATTTAACTTGAGAAGGAAACCTAAATGGAACTTAAACCATCTATTCCTCACATGATACCAATTTTACATTGACATGCTCTGTATTCATGTATTGTAGTCTTGAGACTATTGTCCAGAGGCCTCTCTCCCACTAAAGGAttataatggctgtgtttttctgagcTTAGTGTCTTTTCTTTTGGCCATGTTTATTCTTCTGTCTTATTTCTTTACAATTATGTCAAATGAGCTACAATCATCTACAAATATTTATCCACTGAATATATTAGAGGCATGTACAGTAGTCTGGCAGCCTTTTTATAGGATGTATAAGCAGTGAAGAGTTTCTGAGAATACTTGATACTTTATGAAAcatgaaagttttttttttgtacttCATACACATTTCTATCACTACCAATTTGGAGAAAATGTGATTATTCTCACTGCCCCAGACATACCTTAGAGAAGCTCAATAATTTTTTAacttatacatatatataattaCTTTTGTCACTTTTCAGCATTTCTTTTCTCGTCATGTCTCAAGTGCCTTATTGATACCTGCTAGTGATCATTGGAAATGATGTATTCTTTTTGCATTATGAGGGGTCAATTCCAAAGATATGTGATATTTTGTCTTTAAAGACCATGGAATTTATAGATTTACAGAGTATGTTGGCTATAGTTGCATATTTGTACGGAAATTGCCCTTGTACATAATGCTCAATTGAATTTGTAAGAAATGATTATACCTAATATGGGAAAACCATGCAATCCAGGTAGAATGAATTAGTGATGATGTACCAGCCTTTTCTGTTCAAGACGACACAATGAAAACTATTTTCCCAACAAATGCCGTCTTGTGGTTGACTTCTTAATAAAATGTCATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154528 lncRNA downstream 47131 32891715 ~ 32891916 (-) True G134182
TU154506 lncRNA downstream 49698 32853454 ~ 32889349 (-) False LOC110487437
TU154514 lncRNA downstream 49698 32884463 ~ 32889349 (-) False LOC110487437
TU154510 lncRNA downstream 49698 32884570 ~ 32889349 (-) False LOC110487437
TU154511 lncRNA downstream 49698 32884570 ~ 32889349 (-) False LOC110487437
TU154608 lncRNA upstream 17962 32981056 ~ 32982279 (-) True G134253
TU154609 lncRNA upstream 18342 32981436 ~ 32981888 (-) True G134254
TU154584 lncRNA upstream 31283 32994377 ~ 33001917 (-) True G134229
TU154581 lncRNA upstream 68155 33031249 ~ 33049288 (-) False G134227
TU154578 lncRNA upstream 70281 33033375 ~ 33049288 (-) False G134227
XR_005036431.1 mRNA downstream 49662 32884408 ~ 32889385 (-) False LOC110487437
XM_036946040.1 mRNA downstream 70836 32855765 ~ 32868211 (-) False LOC110487370
XM_036946207.1 mRNA upstream 39035 33002129 ~ 33010958 (-) True LOC110487493
XM_021559423.2 mRNA upstream 49273 33012367 ~ 33018172 (-) True LOC110487486
XM_021559432.2 mRNA upstream 54041 33017135 ~ 33020297 (-) True LOC110487507
XM_021559445.2 mRNA upstream 57727 33020821 ~ 33027137 (-) True LOC110487525
XM_021559487.2 mRNA upstream 93911 33057005 ~ 33074880 (-) True LOC110487583
TU154412 other downstream 150926 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 187469 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 187469 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1290252 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1396038 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 249570 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 902394 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1641121 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2343273 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2711204 35674298 ~ 35675627 (-) False drd2l

Expression Profile