RNA id: XM_021559405.2


Basic Information

Item Value
RNA id XM_021559405.2
length 2083
RNA type mRNA
GC content 0.61
exon number 13
gene id LOC110487461
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32939047 ~ 32968489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTCAAAGTATATGTCATTCAGTCCTGTCTCCCAGCCAACCACCTGAACCACCTGCTGGATGTCCACTATGGAATCTCCGGGTCAGAAACGAGCCAGCCGCGGTGGGACTGCCACCCCACTCTCCCCAACCCGCATCTCTCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATTGACAAGGTGCGTTCGCTGGAGATAGAGAATGCTGGGCTGCGGCTGCGCATCACCGAGTCCGAGACCGAGATCAGCCGTGAGGTGACAGGCATGAAGGTGGCCTATGAGACGGAGCTTGCCGACGCCCGCAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGCAAAGTCAAGGAGGATTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCAGACCTAGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTTTGTCCACTGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTAAAGGCCCAGCTAGCCAAGCTGGAGACAGGTCTGAGCGATGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCCTCAAGGAAGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCTGAGGCCCTGATGGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTATAAGGAGGAGATCGAGAAGACCTACACCTCCAAGcTGGAGAACGCCCGTCACTCCGCAGACAGGAACAGTACCCTGGTGGGGGCGGCTCACGAGGAGCTGCAGCAGACCCGCGTGCGGATGGAGGGCATGTCCTCCCAGCTCAGCCAGCTGCAGAAACAGCTGGCGGCGAGGGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGGGACACGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTATCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCCAACCCGAGTCACTGTGTCCCGTACCACCGGCTCGGGCTCAGCACACACCCATACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGCCCGAGTGGTCCAGTCCACCAGCGGCAGCCGCAACTCCTCAGGCACGGCTAGCGCCAAGAAGAGACGGCTCCATGACAACGACAGCGAGACCTCCAGCCTGGCGGGGGGCGCCGTGACGCGTACACGCATTGCCCAGCAGGCCTCCGCTAGCGGCCGTGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTACGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCACCAGCACCCCCATCGTCTACAAGTTCCCCCCCAAATTCAACCTCAAGGCAGGACAGACCGTCACAATTTGGGCTTCAGGAGCAGGCGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCATCCTGGTCAGCGCCAATGGAGAGGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCATGTGGCCAGCCGTCTGACAAGAGCTGTGCCACCTCAGGGGTGTCCAGTGGCTCCTGCTCCATCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCCCTCTTTATAATGGGTAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154528 lncRNA downstream 49476 32891715 ~ 32891916 (-) True G134182
TU154514 lncRNA downstream 52043 32884463 ~ 32889349 (-) False LOC110487437
TU154608 lncRNA upstream 18383 32981056 ~ 32982279 (-) True G134253
TU154609 lncRNA upstream 18763 32981436 ~ 32981888 (-) True G134254
TU154584 lncRNA upstream 31704 32994377 ~ 33001917 (-) True G134229
TU154581 lncRNA upstream 68576 33031249 ~ 33049288 (-) False G134227
TU154578 lncRNA upstream 70702 33033375 ~ 33049288 (-) False G134227
XR_005036431.1 mRNA downstream 52007 32884408 ~ 32889385 (-) False LOC110487437
XM_036946049.1 mRNA downstream 73181 32855765 ~ 32868211 (-) False LOC110487370
XM_036946207.1 mRNA upstream 39456 33002129 ~ 33010958 (-) True LOC110487493
XM_021559423.2 mRNA upstream 49694 33012367 ~ 33018172 (-) True LOC110487486
XM_021559432.2 mRNA upstream 54462 33017135 ~ 33020297 (-) True LOC110487507
XM_021559445.2 mRNA upstream 58148 33020821 ~ 33027137 (-) True LOC110487525
XM_021559487.2 mRNA upstream 94332 33057005 ~ 33074880 (-) True LOC110487583
TU154412 other downstream 153271 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 189814 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 189814 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1292597 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1398383 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 249991 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 902815 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1641542 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2343694 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2711625 35674298 ~ 35675627 (-) False drd2l

Expression Profile