RNA id: XM_036946113.1


Basic Information

Item Value
RNA id XM_036946113.1
length 2343
RNA type mRNA
GC content 0.59
exon number 14
gene id LOC110487461
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32939047 ~ 32968489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATGCCAGGTAGTTTACAATTAGGCTACATCAGTATTTCAAACAAATTGTAGGCTACTTACATTTCACTTACGGGTGACAAATGCGTATGTTTTTGAAGTGACTTTCTTTCATCAGTCAATAAACCAAAAAGTCCCCAACTGGTTGTGGGGCACCTCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCACACAGGTCCggctgtgcagacacacacactgctccacCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCCCAGCCAACCACCTGAACCACCTGCTGGATGTCCACTATGGAATCTCCGGGTCAGAAACGAGCCAGCCGCGGTGGGACTGCCACCCCACTCTCCCCAACCCGCATCTCTCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATTGACAAGGTGCGTTCGCTGGAGATAGAGAATGCTGGGCTGCGGCTGCGCATCACCGAGTCCGAGACCGAGATCAGCCGTGAGGTGACAGGCATGAAGGTGGCCTATGAGACGGAGCTTGCCGACGCCCGCAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGCAAAGTCAAGGAGGATTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCAGACCTAGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTTTGTCCACTGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTAAAGGCCCAGCTAGCCAAGCTGGAGACAGGTCTGAGCGATGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCCTCAAGGAAGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCTGAGGCCCTGATGGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTATAAGGAGGAGATCGAGAAGACCTACACCTCCAAGcTGGAGAACGCCCGTCACTCCGCAGACAGGAACAGTACCCTGGTGGGGGCGGCTCACGAGGAGCTGCAGCAGACCCGCGTGCGGATGGAGGGCATGTCCTCCCAGCTCAGCCAGCTGCAGAAACAGCTGGCGGCGAGGGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGGGACACGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTATCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCCAACCCGAGTCACTGTGTCCCGTACCACCGGCTCGGGCTCAGCACACACCCATACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGCCCGAGTGGTCCAGTCCACCAGCGGCAGCCGCAACTCCTCAGGCACGGCTAGCGCCAAGAAGAGACGGCTCCATGACAACGACAGCGAGACCTCCAGCCTGGCGGGGGGCGCCGTGACGCGTACACGCATTGCCCAGCAGGCCTCCGCTAGCGGCCGTGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTACGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCACCAGCACCCCCATCGTCTACAAGTTCCCCCCCAAATTCAACCTCAAGGCAGGACAGACCGTCACAATTTGGGCTTCAGGAGCAGGCGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCATCCTGGTCAGCGCCAATGGAGAGGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCATGTGGCCAGCCGTCTGACAAGAGCTGTGCCACCTCAGGGGTGTCCAGTGGCTCCTGCTCCATCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCCCTCTTTATAATGGGTAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAA

Function

GO: NA

KEGG:

id description
K12641 LMNA; lamin A/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154528 lncRNA downstream 49476 32891715 ~ 32891916 (-) True G134182
TU154514 lncRNA downstream 52043 32884463 ~ 32889349 (-) False LOC110487437
TU154608 lncRNA upstream 12567 32981056 ~ 32982279 (-) True G134253
TU154609 lncRNA upstream 12947 32981436 ~ 32981888 (-) True G134254
TU154584 lncRNA upstream 25888 32994377 ~ 33001917 (-) True G134229
TU154581 lncRNA upstream 62760 33031249 ~ 33049288 (-) False G134227
TU154578 lncRNA upstream 64886 33033375 ~ 33049288 (-) False G134227
XR_005036431.1 mRNA downstream 52007 32884408 ~ 32889385 (-) False LOC110487437
XM_036946049.1 mRNA downstream 73181 32855765 ~ 32868211 (-) False LOC110487370
XM_036946207.1 mRNA upstream 33640 33002129 ~ 33010958 (-) True LOC110487493
XM_021559423.2 mRNA upstream 43878 33012367 ~ 33018172 (-) True LOC110487486
XM_021559432.2 mRNA upstream 48646 33017135 ~ 33020297 (-) True LOC110487507
XM_021559445.2 mRNA upstream 52332 33020821 ~ 33027137 (-) True LOC110487525
XM_021559487.2 mRNA upstream 88516 33057005 ~ 33074880 (-) True LOC110487583
TU154412 other downstream 153271 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 189814 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 189814 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1292597 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1398383 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 244175 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 896999 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1635726 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2337878 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2705809 35674298 ~ 35675627 (-) False drd2l

Expression Profile