RNA id: XM_021559467.2


Basic Information

Item Value
RNA id XM_021559467.2
length 1439
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110487536
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33028873 ~ 33045721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACCTAGCTATCGACGCTCGTCTCACATTGGTGACGCAGATCAAAGCTGAGAATGTACTATTTGAGGTTTATTTTAAAGTTTGCTTAtctttctcaaaggaaaaaccgtATGTAAACACTACGAGGCCACACCTATCCTTTATCAGTATGCTATAATTTTGTTGCCAATCTGCAGAGGTCAGAACACCAGCACCTGTGTGAAACTCGTTAGGCCAGAGCTGTTGTTGCATGTTTTCCTCCTTTAACGTGACCATGAGGACCGCTGAGAATGCTCTGTTTTGCCACCTCTACATGTTACTGCTTTTTGTAGGTTTTTGCCAAGGAAAGGACCTCTTCTTCAATGACAAAGGACTCCTACTCCCAGAATCCTACAAGATTGGCTGGATGGAGGCTATTGATGACGACAAATTAATCTCTGACATCACCATACCTGGTACCCATGACACCATGGCTCTCTATGGAGGCCCAGCGGCAGAGTGTCAGGCCTGGGATTTGGGGGATCAGCTGAGGGCTGGCATACGCTATCTGGACCTCAGGATATTCGCCTTTGAAAACAAACTCTATGTCATGCACTGGGTTGTCTACCAACACAAGTCCTTCTATGAGGTCCTTGATACGATCAGAGCATTTTTGTCTGAATTCAGAAGTGAGACGGTTCTCGTTAGAGTGAAGcctgatttgtttgataaagagaatgttgaggagctggttgGAAAAATGATTATTGATGATACAGATGTATGGGTGAAGTCTGACATGCCAACTATGGCTGAGGCAAGAGGAAAGATGATATTTGTACAGAAATCCAGCTTTAAGCTGGGCATTCCTCTCTTGGAAACAGACAGCAAAGGTGACTATGAAGTTACTCATATTGCAGACAAGGAGAACAAAATAGTGAAACACTTGACACAAGCTTCAGGTGATTGTGGTGGGGATTATATCGTTCTGAGCTACTCCAGTGGCACTGGCATTGGCACACTGTTGGGCATGTTTCTAACTCCCAAGAAGGTGGCTGAAAAGATTAACCCATGGCTCGATCAGTATCTGAGACAGTTCTCCAGGGACCACAGCAGTGTATGTTTCGGAGTGATTGCCATGGACTTTCCTGGTATCGACCTCATTCAAACAGTCATCAAGATCAATGATTGGTGAAGTGTTCACCCATGGAAGTCATGATTATATTGCTTTCTGAAATGTTAGTTGACGCCATTAGATTAAGTGCAGCAACAACACATGACACATACTATACTTGATTGTGCTCATATTGAAAAGGAGCGAGATAGAAGACTGACAAAGTAAAGAATTTAATGATTGGAACGTAGTATTGGCATGCGCTCTTAAACAATAATAATGAAGACTTGGCACTACACGTTTTTGTACTTTGCCCCTGCTTGCTGTATTAAAAACAAAGAAAATCATTAAAATTGTAAAGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153494 lncRNA upstream 30379 33011062 ~ 33012909 (+) True G133272
TU153489 lncRNA upstream 41280 32996591 ~ 33002008 (+) True LOC110487479
TU153499 lncRNA upstream 46792 32995620 ~ 32996496 (+) False LOC110487479
TU153604 lncRNA upstream 61260 32981182 ~ 32982028 (+) True G133374
TU153548 lncRNA upstream 198754 32844251 ~ 32844534 (+) True G133324
TU153645 lncRNA downstream 35966 33081687 ~ 33081982 (+) True G133415
TU153647 lncRNA downstream 37627 33083348 ~ 33083575 (+) True G133417
TU153665 lncRNA downstream 57209 33102930 ~ 33135626 (+) False G133432
TU153666 lncRNA downstream 57209 33102930 ~ 33135626 (+) False G133432
TU153668 lncRNA downstream 57209 33102930 ~ 33135626 (+) True G133432
XM_021559474.2 mRNA upstream 9435 33030310 ~ 33033853 (+) True LOC110487571
XM_021559416.2 mRNA upstream 41282 32988834 ~ 33002006 (+) False LOC110487479
XM_021559388.2 mRNA upstream 103478 32896415 ~ 32939810 (+) False LOC110487447
XM_036946103.1 mRNA upstream 103478 32902516 ~ 32939810 (+) True LOC110487447
XM_036946079.1 mRNA upstream 161230 32877901 ~ 32882058 (+) True LOC110487411
XM_021559477.2 mRNA downstream 111 33045832 ~ 33049288 (+) True tmem176l.1
XR_005036446.1 mRNA downstream 84596 33130317 ~ 33160062 (+) False LOC110487588
XR_005036445.1 mRNA downstream 92326 33138047 ~ 33160062 (+) False LOC110487588
XR_005036447.1 mRNA downstream 92326 33138047 ~ 33160062 (+) False LOC110487588
XM_021559571.2 mRNA downstream 270569 33316290 ~ 33321834 (+) True LOC110487649
TU152486 other upstream 1155716 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1160215 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1676966 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1680075 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1750254 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 121717 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 450733 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 768312 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 916696 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1642234 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile