RNA id: XR_005036447.1


Basic Information

Item Value
RNA id XR_005036447.1
length 5218
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC110487588
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33130317 ~ 33160062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagacagagagagacagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaggagcgcACACTATGCGGTGGAATATTTTTGGattccctctcccctgtcttaaCCGTCAGTGTTTACATGAAGAGGATTTTGAGGCCAGTCTCAAATGACGACTTCTGACTGAAGCATAAAGTTGTGGGAGCTGCACATATAGGCCAACTGCACATGAAACAAGTGAATCCGACAAGTCATGAAGTTATGCAGATAACACCGCATCTGAGAAAGAACTTGTTACCCATCACCCCCGACTCAACCCAATACAGCTTTGAAAAAGCACAGCCTGTGAGGCAGTTTGAGGACTTCCCTTTGGACAACAGCCCTGAGACCAATATAAATCTGACAATAACTGACTAATTAACACAATAGATAACAATACAGTTTCTTCCGGAGTTTTACTGACTTTGTGAGTACTAAATCCAACCAACTTCTCCTCTGCAGTAGCATAGAGCCAGCAAGCTCCCTTCCCTTCCCAGCTATGGCTCCCCCTAGCCGTGCTTCCATATTTCCTTGTTTATGCACAGCATAATGGCCTGACCCTCCCTTCTCTATAACATTATACAGACACCACCTAGCACCTGAAAACCTAAATTTTTCTGGATATATTTTGAGATTAGTCTCTATATACCCCATATTCATCCAATGGCACCCTAACCATAGTGGAACAGAGCTTTTCTTACCTTTACAAAGtgcctctctctatacctctctctctccaaagtcCCAACCTCGATAGCCTCCTTCTTCTTCCCAGAAATCCCTGCAAAAGGGGCACTTCCATGTAAGTTGAATGTGTAGGGGTGCTCATTTTGGACTCAACCATTACTGTAAAATACAGAAGGCCCCAGATGCTCAGTAAGGGCCTATTTGGGTACATAGTCCCACAGGCGCCAACATGTCCCTTTCAAACGGTATGACACTGGCCCTATAGTAaataaccctcccctaactccctctgtcctcccccccAATGGCTTTCACATCATATGGCCCATCCACCAGTCATACAGCCAATGCTGAGAAGCAATTGTAACATGCTGCACAAATGAGCTCTCAGAGAGTTTCCACTGGGTTTTTGTGGATTCACCAAGCCTTGGGGCCTCTTAGAGCTGCCCAAAATCATTGCTAGAGGATATTTTGGACACACAGAGACCCCTTTTTATTGAGACAGACCATTTGAATGCAGAGGAAAATATTCTGGTGTGAATATGATGCAATCAAGGAAAAAGAGAGCACTGTCTCCAAGTGTCCCTCTCCAAAAGTGCAGAGATGTATCCACTGGGACAAGGAGCTTTCCACTCACACAATGAGAAGGGGTGGCGGATGACAAATGCCAATTTTGGGGTCCGCGCTTTGAAAGCCCAACAGGTAAGCTCACTAATTGACAGGACACATTGCAGTGCATAAGGTAAGGACTTCATTCTTGTTCAAAACTATATGTATAtacttaaataaaatatattttaaaaatattttaagATGTAATATATCATCTCAAACTGAAATTATACATATTTACCATATATTCTACAATATACACCTACCActttattataatatttttttcagCACTAGCCTATACTAGCTTACAGTTGAGAGCATGGTCCTGAAACAAGATAACATGctaatgtttttaaaataaacTTATCAGAAAATGAACAAAGCATAGCCTAGCAGTTTAAGACTTGACTGAACCCAATTTGATATAGCCTACCTGAATAAGCAGCTATATATCAGGATCTGACAGTAGGCATCATCAAGACATGAAATGAGTATGCTTTAAAAATTGCCAAGGTAGAAGTGGTGTGAAAAACAAATGCCAGTACTTGGTTTCCTGCGAGTCCAGACTTGAGATGATCTTTGTCCTAAAACAATAATCCCCCAAACCAGTCGTCAACTGCCCAAAGCAACAGCAGATCAATCCAAACCTTCAGTATCAAAATAGAGCGTTAAAACGTAGTCTTCATTTTAAAACTTTGAATAACAAACGCCTAAACACCTACCCAGAACGAATATCGGCACTACAGCACAGATATGCTATTTAAAATGAATCATGTATTCGTAAACAATGTTAGATTATATTTAATCGAATTATAATGAGACACTAGGTACATTCAGAATATGGAGACAGGCTTCAGCGCAGGATTGGAGATGTCAGCTGCTGGCGCGCGCCTGTCGCTTTTGTTCACGAGAACAGTCGCAGCTGTCTGACTAGAATAGAGCACATTTGTGAGCGGAATAAGAACAAATAACAGAAATGAACTGGTAATTTATCTGAACAGTAGCCAATAGCCATGGTGGTAGTAAGCTTCATATTTTAGTTGTCTGTCGGCGGTTTGAATGCGTAAATATTTACATGTAGGCCTACACAAACCTGGACGTTGCGAAAGATGGACGCCCTTGTTGATGGGGGTTTGTTTGCAGACAGGCAGACCATTGCATGGGCTACAAGGGAAAAGCTAACCTAAATGCCGGTGCATACTATTCGACAAATTAGGCATCTTATAAGAGCATATGATTTGAGCATTTTACATTTTAAACCATTCCTTCTAGCTACCTAAAGTTGAATTATACATAAGGGATTAATGCAAGGCTAAATGTCGCCTTTCACTACAAGTCGTAACACATATCAATAAAATCCATCAATATCTGCAGTGTAACAGTATCGCATTCCCATTATGATATGAGGCAGTGCAGAGCAGGCTATGTGGCTACGCTATGTTCTGCGTGCGTAAAACACGCGCCAACGTCACAACGCTTCTACATAGGAACAGAGCATATGGATgaaatacagtaatacagtaatgaaTGGCTTGGGGGTGGTCAGGAGGTGGGCTTGGCTCCTGTTCATTAGTTGGAGAAttttgcatttttcaaacacATTAAACATATTTGTCTTGCTATCTACAGCCATAATCACTACGCTAAATTCTATGTTAAACACTTTTgtttttctgcatatctaagcataccttttgagctgtctgtatactcctggttattctttaaaaaaacgaaatatgcttctctgcatctctgctaaaatatgggtaaaatattgaaaggaatgtgagtcttattcagtacatttagttattgcttgcttttctaaagtctaccaatcttgccagcaggcatgccagcgaagatgatagttagacaagctagctactctaacttgattgattgCCTCAACCTATCTGGGATAGCTAAAGCCAACAtcaaattgctaggtggctagtagtTTTGAATTTAATTGTTTTATTAAATTCAGATTGTGTGTCACttatctacacagaataccccataatgtcaaagtggaattgtgtttttagaaatgttaacaaATTAATTGAAAAAATAAACTTGAGTCAAAGTATGCAATCTTTTtgtaatggcaagcctaaataagttgagaggtaaaaatgtgcttaacaagtcacataataagttgcctGGACTCGCTCTGTATACAATGATACTGTATAACATGACTACccaatctctgtacctcacacatacaattatctgtaaggtccctaagtcgagcagtgaatttcaagcacagctTCAACTACAAAGACAAGGGGGGTTTTCTATgttttgcaaagaagggcacatatTGGAAGAAGGGTAAAAAACTCaaatttaaaaaagcagacattgagcaTTGTGCAGTTATTAATTGTACAcattagatggtgtatcaatacacccagtcactacaaagatacaggcatccttcttaaatcagttgccggagaggaaggacaccactcttggatttcaccatgaggccaatggtgacttaaaaacagtaacagagtttaatggctgtgataggagataactgaggatggatcaacaacatcgtTACTCGGCAACAGTAACataaattacagagtgaaaagaaggaagtctgtacagaataacaaatattccaaaacatgcatcctgtttgcactaaagtaatactgcagaaaatgtggcaaatacatacactttttgtcctgaataaaaagtgttatgtttgggcaaacccaacacatcactgagtaccactcttcatattttcaagaatggtggTAGCTGCGTCATGTTATGGGTTGGAAAGAACTAGGGaggtttttttttgttgataaaaGAAAcgaaatagagctaagcacaggcaaaatccttgaggaaaacctggttcagtctgctttccaacagacactgggagacaaattaacATTTCTACAGGACAATAATCttaaacacaaggtcaaatatgtactggagttgcttaccaagacgtcattgaatgttcctgagtggcttagttacagttttgacttaaatcatcagcttgaaaatctatggcaagacttgaaaatcgCAGTCTAGCAGTGATCaataaccaacttgacagagcttgacacattttttaaagaataatgggcaagtattgtacaatccaggtgtacaaatCTCTTAGAGGctttcccagaaagactcacagctgtaatccctGCCCACGGTGATTCTAACATAAATTGACTCAAGGAGtttaatacttatctaatcaagatatgttagtgttttattttccattaatacaaaatatatatactttttcttccCCTGACATAACAGGGTATTTTGTGTATATCATTGACCAAAAAATGACAATGAAATCAATTTGAATTCCActttgtaacaaaacaaaatgtggaaaaagttgagtgTGAATACcatctgaaggtactgtatatactgtatataatgtaaaTATCTTTAAACAGGACAAATCCGAGGGGAGCATGTTCCCCTGTGACCCATTTGGGCATGACACCTCTGCTATTTATATTTGTGTTATTGTTATAATAAACAAtgggaaaataaatacacaagAGCAATATTTCAGGTTAAGGTTCTTCTGTCCATGATATGCCATACATGTTGATGTTTCTATGTTCATTTTGATGTTTTCTATAAGCACTAGGGCTAGGCAACGGAAGATGGATCCTACATGCAATAGATTATTACAAATTACATACACTGGCGATACTCTATGCTGCTTTAGTGACGATATTCAATGCAACATTGTAcagagatttttttttgtcaataaaATTTAATATTTCAAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153665 lncRNA upstream 2421 33102930 ~ 33135626 (+) False G133432
TU153666 lncRNA upstream 2421 33102930 ~ 33135626 (+) False G133432
TU153668 lncRNA upstream 2421 33102930 ~ 33135626 (+) True G133432
TU153647 lncRNA upstream 54472 33083348 ~ 33083575 (+) True G133417
TU153645 lncRNA upstream 56065 33081687 ~ 33081982 (+) True G133415
TU153766 lncRNA downstream 84935 33244997 ~ 33245280 (+) True G133520
TU153769 lncRNA downstream 93025 33253087 ~ 33253306 (+) True G133523
TU153777 lncRNA downstream 96430 33256492 ~ 33260732 (+) True G133525
TU153779 lncRNA downstream 103551 33263613 ~ 33264167 (+) True G133527
TU153795 lncRNA downstream 132478 33292540 ~ 33294126 (+) True G133542
XM_021559477.2 mRNA upstream 88759 33045832 ~ 33049288 (+) True tmem176l.1
XM_021559454.2 mRNA upstream 92326 33043242 ~ 33045721 (+) False LOC110487536
XM_021559571.2 mRNA downstream 156228 33316290 ~ 33321834 (+) True LOC110487649
XM_021559607.2 mRNA downstream 246747 33406809 ~ 33408519 (+) True LOC110487688
XM_021559622.2 mRNA downstream 274636 33434698 ~ 33460997 (+) False ntrk1
XM_021559629.2 mRNA downstream 274636 33434698 ~ 33460997 (+) True ntrk1
XR_005036461.1 mRNA downstream 371528 33531590 ~ 33540695 (+) True LOC118939517
TU152486 other upstream 1250475 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1254974 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1771725 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1774834 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 1845013 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 7376 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 336392 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 653971 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 802355 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1527893 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile