RNA id: XM_036946262.1


Basic Information

Item Value
RNA id XM_036946262.1
length 4731
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110487594
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33164978 ~ 33172969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATCACCTTTAACATACCTAATACATGCGGAAGTGAATGGTGTTTGGAGATAATTATCATGAACTGTGTCTGTTCTCTTTAATGTGTTATTTTCTCTGGTATTAACGTGTTCCTTTGAAATACCGCCGGTTCGTTCTCTTACCAATTTGTTGTTCTCTCATCACCTGTGTTAGAAGCTGTCGGCTAGCACTAGTCTTTAGTGCCCGGgtttcaaaaaatatatttacatagtATAGCAATGTTCTCTGTTTTACAAAATGAAGACGACGCTCGAGCAGTCGAACATGCAGTTAGAACAGAGATGCATACTATTGTGAGTGTTATTTCTAGTATCAACAGTGCCAAAATACAGGAATATCAAAGTAAGTTGGCTAAGAAGGACAAAGAAAACGAAACGCTGAAACGAAAAGTTACAACCGCAGAACGTGAGGTCACAGCATTGCGAggctccttttcctcctcctgaATTTTCTGGAAATGAATGTCATCAAGTCAGGTCAAGAAGCACTTATGCACTTTCACCAGAAATGCAAAGAGGGAAACCAATTTGCAATGAAAACGAGGTGTCAAGCAAAGCTGAATGGAGAATAGATTTCCCCTGTCTCGTTGGAAGGACTCCTCCCCAGGTTTTTTTCCCAGTGCAAAGACACATCTCTTCCCACTGGGGCATCAACTATTTATATGTCCCATCACCAGAACCCTACTTCACATTCTGCAGAAGAGTCACGGTTTTTAGCAGAGCTAACCAGAGGCCAGTCCCCATCACCCAGTCCAGTCACCAGACCAGTGATAAAAGAGGAACCCTCTGACATTGAGACATTCTTCATTAAATGGGAGATGAGTGAGGAGGGTATTGGGGAGGAACAGGAGGGCCTAGGCCTGATACACATCCTGGGAAAAGAGTACGAAGCCCAGCAGACGGGTGGAACTCCAACCAGGCAAAGAGACGGAACTCACCCTGTTGCTGGTAGCCAGAGTGGACATGAGTATGGGGAGAGACCGACCAGGCATCTGAAAAggagagagagagtccatgCTGACCCTGAGAAGTTCCGGGCCTACAAGGAGAAGGAACGACGCAGGAATCAGCAGAGGAAAGTGTCGATATCAGATTTACCTGAAGAGAGAAGCATCCAGACGCTGTCGTGCCTGCAAATGTCCTTTTTCCCAACGAACCCCACACAGCCCTGCCACCTCCCACAGAGACACCTGGGGAGACTAGGAGACACCACAGACAGTAGAGGGGGGGGGATTAGGTCTGCACAGATGAGTTTAGGCTGCCGAACAAAGATTGGGATTTGGGATCATATTTGTTGATATTTCCTTTGTTGTTTGAGAGGATGATTTCTGTATCATATTGTAATGATCCAGTTATTCAATGAATTGGTTCGGGCTGTTAATGttctatgttttttttatttggaaATGTCGGTAAATTAATTCACATTGTACAGCATTTGCTTTTGTTCACTGATTTACCACTAGACGGTGCTGTGATTGAGCCACCCCAAGCACATTTGACACGTGACGCGCGCGATTGGCGCGGCGGAAGTGAACTGCGAGGTAAACGTTGAGACGTAATACAGTTGCTCTCTAAAACATGTCAAATTAATTTTCTTCTGAATATTTTATACAAGTGTGAGTGCCTTTGAAATACCACGTTTTCGTTCGCTTTCTCTTTTTGATAATATTGTCACTGAAGGGTTACAAACTGACGCACGCATCGGTAAAGTTGTTGGCTGCTGACTGTTTAGCCAGCTGAGCTAGCTAGTAATGTTACGTTACAGTGCCACAGACAAAAGGGTTAGCTAGTTATCACCTGCTTCACTCTGTGACTTGGCCAATTTAGCAAACTTGACAACGTTAGGTTGTGCGGGtgagttaaaaaataaataataataatctcccAAGTAGAGCAATGAATTCCTGTTTACATAACGAAGAAAACGCTCGTGCAGTGGAAAATGCTATCAGAACAGCGGTAAATACTGTCATGGATGTTATTTAcaatatgaacagtaccaaaatACTGGAATATGAAAGGAAGGTGGCAGAGAGGGACAAAGAAAATGAAACCCTTAAATATAAGCTTAAAAAAGCTGAAGACGAATTAACAACATTTCGAGTAGGCCTATCCTTTGAACTGTCTGCACTTTCACCAGAAAGAGATTTTGGGAAACCCATGTGCAATGAGAACGAGGTGGCAAGCGAAAATGATTGGAGAATGGATTTCCCCAGTCTCAATGCAGGGACTCCTGGGCTTTCAGCAGAGCGAGCCAGAGGCCAGTCCCCATCAGCCATTCCAGTCACTAGCCCAGTGATAAAAGAGGAGCCTGCTGACACTGGGTCCTTCTACATCAAATGGGAGATGAGTGAGGAGAGTATTGCAGAACAACAGGAGGGCTTAGGCCCGATGCACGTCTTGGGGAAAGAGTCTGATGGAACGTCTTCTGTTGCTGGTAGCCAGAGTCCAGGCGATAGACGTTCAGAACAGTCTGAGGAGACATTGACAGAGCATGTGAAAAGGAGGCTGTCAAGCGCAGAGACACAGCggcaatacagagagagaatcCGTGCTGACCCTGAGAAGTTGCGGGCCTACAAGGAGAGGGCAAAATGCCGggaggaggaggaggaggatgatgatgaggattgGATCAGCAACTTTCATGTCCCTTGGCAGCAGACGCCTGAAAGCCTCAGGCGAGCCATTGCAGAGGGACGAAGAGTCGAGGCGGCAGATAGGCGGCTGATGGTGAGGATCACCGTTGATGCAATGCGTGTACACTGCCTCAACCCCAACAAGAAAGTATGTGCAGAAATAGCCAAAGCCATAGTTGCAGATTATCCAGAGAGCTTTGCAGACCTGTCAAAAGAAGGGGAACTGCTTAGCAGAAGGTACTCCTCCTTGCTCACCCAAATAAAGACAAGAGTGGAGCATGTGAACCGGAACACTGAAAATAGAATACGCAGACCCAAGACGAGCAAAAAAGGGGAACACAGCAACAGACAAGCCAAAACAGCAAGAACAAAAGTGGACAGTTATGGGTGCATCAACTGGCACCCACAGGACCTTCCGGAAGGGGAGACTCCTGAGTCCCTGGAAAACAAGAGACAGATTATGGCCACCATTTTCAACAGTGCAGGCCCCAGAGGTGTGGACAGGGGAGATGTGGATGAATTCATGAGGCTTACGTACATTAACCAACGCCACATGATAAATGCATGGCCAGCCCCAAGCATCGGTGACGTCAAGGAACAATGGCCTTTTCTTTTTACCAAGAGATGGCTCTGTGCCCACTTCCACATGCTCACTGGAGTTGAgatcgacagctgcctcagtGGCGCTCTGCTGAGCAAGGGAAAGACCATTGTCAATTTCTTCCGAAGTCAGAAACCCAACTGGAGGAGAGGCACCCAAAGTCTCCTCAATGACATTGAAGGTGACCTCAGTGGAAACAACAAGGACCTCACAGCCTGTGCTGCCATTCTTCTGGTGCTGTCCCacttcagagagaaagaggactctctcttcctcttggcTGATGTGAATGACACCCAGATGGATGTAGAGGCTCAGTTGCATTTGCCGGCCACTCCAAGACTTATCATGCTTGGGAGTTCCCTGCTGGCTTCATCTAAATGGATGGTGTCGCTCGAGGGGAGAGTGGTCTGTGTTTTGGAAAATCAGTCCGACTTTGCTGCTGCCCTCTCTGTGTTCTTCGGATGTTTCTACGTGTTCAATACAGAGTACCAGGAGGCAGCCTCAGCAACACTGGAGCTTATTCAGAGGTTTCTAGTAGGGATCAACCCAAATGAAGGAACCAAATGCTCTTCATACCTTGATTCAGAAGCCGGGGTGAGCCGCAGGACTGGAAGAGTTGTGCAAAGGAAGACCGATGCAGTTGCCACCTTCCTCAAAGACCTGACTGAATTTGAATGGTAGAAACAGTTTCATAGGAgatgcaaacacacaaacaaggaCGCACATACATGATGCATAGCTTCAAATGTTGTAATGTTGCTCTTGTTTAGTATCAATCAATCACCACTACAGATTGCAATTGAGATCTATCATGATATGCATCTTGGAATATTTGTCCTATGTTTCTGTTGGCTGGCCCTGTCTGTGATGGGGAAACGTGATTGTATAACTTTTGTTATAATGATGTTCTAAATGATTACCggaagtgttttttttgttgacagATTTAAGATGTTTTGTAGACTTATTGTAAACAAAATCAGTGTGATAAATTATATTTTGTTCGGAACGAGTTCCCATTTCACTACAGTGTGAAAGGGGCAGTGCAGATGAACTTGATTTtcctgcatttaaaaaaatatatatttccacatgatgaggttgtaataaaactgagaaattgtgaaaatgatgccCTTTgttgtgtaagagctgtttgaaaattggctggaatttcagcctgttcagtTGGGATGGAACTTTTGGCCCACCTCATTATGTCGCAATGTGATCTGATTATAATAGACCAATGATTGTTCATATGGGTAAGGGGGTTGGCTCTAGACCattctgtcagccaatcagatctGTATATGTAAATCATGTATATTCAAATGTGTTTCCTAACGCCCACATGATCAAACTGAGCATTTTAAGGGCCGAaggaggctcagggaaataaatGGTTAAACACGTTGAATATGTTGGAAGTTATTTTCATTAAATAAACACAGTGATTTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154586 lncRNA downstream 58473 33084935 ~ 33106505 (-) True G134231
TU154580 lncRNA downstream 115385 33033375 ~ 33049593 (-) True G134227
TU154581 lncRNA downstream 115690 33031249 ~ 33049288 (-) False G134227
TU154578 lncRNA downstream 115690 33033375 ~ 33049288 (-) False G134227
TU154584 lncRNA downstream 163061 32994377 ~ 33001917 (-) True G134229
TU154721 lncRNA upstream 58031 33230996 ~ 33231201 (-) True G134361
TU154724 lncRNA upstream 63000 33235965 ~ 33236189 (-) True G134364
TU154727 lncRNA upstream 76955 33249920 ~ 33250188 (-) True G134367
TU154729 lncRNA upstream 80248 33253213 ~ 33253422 (-) True G134369
TU154739 lncRNA upstream 113774 33286739 ~ 33287261 (-) True G134379
XM_021559504.2 mRNA downstream 9369 33144374 ~ 33155609 (-) False LOC110487587
XM_036946241.1 mRNA downstream 27000 33134138 ~ 33137978 (-) True LOC110487585
XM_021559484.2 mRNA downstream 84950 33075283 ~ 33080028 (-) True LOC118936288
XM_021559487.2 mRNA downstream 90098 33057005 ~ 33074880 (-) True LOC110487583
XM_021559445.2 mRNA downstream 137841 33020821 ~ 33027137 (-) True LOC110487525
XM_021559540.2 mRNA upstream 35535 33208500 ~ 33225124 (-) False LOC110487618
XM_036946288.1 mRNA upstream 35535 33208500 ~ 33225125 (-) False LOC110487618
XM_036946284.1 mRNA upstream 37619 33210584 ~ 33225125 (-) False LOC110487618
XM_021559550.2 mRNA upstream 81591 33254556 ~ 33256182 (-) True bola1
XM_036946299.1 mRNA upstream 83509 33256474 ~ 33265949 (-) False sv2a
TU154412 other downstream 376857 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 413400 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 413400 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1516183 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1621969 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 39699 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 692523 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1431250 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2133402 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2501333 35674298 ~ 35675627 (-) False drd2l

Expression Profile