RNA id: XM_021559571.2


Basic Information

Item Value
RNA id XM_021559571.2
length 1513
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110487649
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33316290 ~ 33321834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATTGCCGCATCCTAATGACCCGATATTCCACCTGAACACATGCACATGGCCCATAAAGAGAAAAACCCTATGCGCGTTTGAAGTCAGCATTAAATTAACGTATTTGCTATATGTCGAAACGCCAAGCGTAACCTATAGACTTTCCATGTATGATAATAAATAACGTTAACGTCAATATCAACGGTTTTCATCGTTTTGGTCAAATCCAGTCTACGTCGTGTGCGCTTTTAATCTATCCTGATTACTCCAGCTGCTCTACTTCGTATTCAGTTTCTGTTCCCGTGCCGTGAATACCTGCTGTCAATGTAACCTACTCTAGTTAGAGGAACATTCGAAAGCAATTGCCATTGTAACGTTATTCATTTTCTCTCACTGGAACTGGTACAACGATACTGCTTTGTTATGCATTTTGGATTTGCCTAATTTCCATATTTAGATAGGGTGGTTTTAAAGACAACAGAGAGTGTAACATATGAAATAAGACCGACGCATAGAGGATGTGCCCCAGAAACCAGGTCGATGAAATATTGGCACTACCATGAGAGGAAGCGGTATGGACCTTTTATGGAGAATCTTAGCGGCTCTGAGCTTCGATTGTTTTAAAGGTTCGGCGTCTTCACAGAGGTCTCCAGGCAAGCTGAGCTCCAGCCAGGCAGGTAGTCTGGAAAGCAGCTCCCTGACTGGCTCGCTCTCCCTGGGGCCAGACCTGCCTCACTGCCAGTGCTGCATCTCCTACGAAGCCCGCCTGAAACGCCTGTCCTGCGGCCATCTCTACTGTGACCCTTGCACAGACCAGATCGTCAACCTGGCCTTTGAGGACATCGAGGGCCTCTCTGATTACCCCTGCCCCATGTGCAAGTCCCTCCGCAAGCTAGGGGACCTGGGCCCCCCCTCTTATGGGTACCTGGGGACCCCCTCCTTTGGGCCATGTGGGACCCTAAAGCAACAGATGGCTAAAGAGCATGGGAGCAGGTGGGGGTAAAACTGAGGCAGTTTATACTGTACATCAAGGGGtgtgggtaaaaaaaaagcaTGTTGTCCCCTCTCCAGATTAAATAATGTAGGAACTATTTTGTCTTTTCAGTTATGTCTTTAGTGTTTTGATTTGAATATTTTAATGCACTGCCTTACACTGAGATTGTGATCTGGTAACATGTGGTGGGAAGTGGCTCTGTCTTTCTTCTTTGTGTAATATGGTGGTGGAAGTGAAACTAATGGAAGTGCATAACATTACAGATAAAGTCCATTTGTGTGCCATAACATAAGTGGTTATTGCAGGGTGATTAAGCCAGATCAAAGATAAATATTAGATGTTTGTGTCAGAAAGTTCTTTATATTTATGTGTACTGATTATTATTACTAGACATTTGCACCTTATTTTATATTTTGAGTGTACTTACAGCTTATGCATTTTAATTTAACTGAATTGTACAGTGCCATACTAGTTTTAAAGTGTTCAATATCATATCGTAAATATTTATTTTGCTAAAAAATAAAGTTTGTGAATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153795 lncRNA upstream 22164 33292540 ~ 33294126 (+) True G133542
TU153779 lncRNA upstream 52123 33263613 ~ 33264167 (+) True G133527
TU153777 lncRNA upstream 55558 33256492 ~ 33260732 (+) True G133525
TU153769 lncRNA upstream 62984 33253087 ~ 33253306 (+) True G133523
TU153766 lncRNA upstream 71010 33244997 ~ 33245280 (+) True G133520
TU153820 lncRNA downstream 1309 33323143 ~ 33323421 (+) True G133563
TU153821 lncRNA downstream 2845 33324679 ~ 33324919 (+) True G133564
TU153822 lncRNA downstream 3306 33325140 ~ 33325355 (+) True G133565
TU153823 lncRNA downstream 4195 33326029 ~ 33326349 (+) True G133566
TU153824 lncRNA downstream 5209 33327043 ~ 33329134 (+) True G133567
XR_005036446.1 mRNA upstream 156228 33130317 ~ 33160062 (+) False LOC110487588
XR_005036445.1 mRNA upstream 156228 33138047 ~ 33160062 (+) False LOC110487588
XR_005036447.1 mRNA upstream 156228 33138047 ~ 33160062 (+) False LOC110487588
XM_021559477.2 mRNA upstream 267002 33045832 ~ 33049288 (+) True tmem176l.1
XM_021559454.2 mRNA upstream 270569 33043242 ~ 33045721 (+) False LOC110487536
XM_021559607.2 mRNA downstream 84975 33406809 ~ 33408519 (+) True LOC110487688
XM_021559622.2 mRNA downstream 112864 33434698 ~ 33460997 (+) False ntrk1
XM_021559629.2 mRNA downstream 112864 33434698 ~ 33460997 (+) True ntrk1
XR_005036461.1 mRNA downstream 209756 33531590 ~ 33540695 (+) True LOC118939517
XM_021559709.2 mRNA downstream 346309 33668143 ~ 33694941 (+) False LOC110487797
TU153719 other upstream 146912 33167438 ~ 33169378 (+) True G133473
TU152486 other upstream 1428718 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1433217 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1949968 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1953077 31360436 ~ 31363213 (+) False eaf1
TU153923 other downstream 174620 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 492199 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 640583 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1366121 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 1649806 34971640 ~ 34971931 (+) True G135916

Expression Profile