RNA id: XM_036946445.1


Basic Information

Item Value
RNA id XM_036946445.1
length 4456
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110487797
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33668143 ~ 33694941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCGTCAGAGCACAGAAAGCAGTGAGGGAGTGTGCGGCACACGAATGTGCTCAGTGCTGCTATCAGCACTAGAAGCTTGACAGGCGACCAGAGGGGGACACTGATACTGATAGAGGGGGTGAGAGACTCTCTTCCGACGTCGGTACTGGAACGGATGGGCGCGACATTCGTCCACTAACCGGTAACTGTATATTCCACGGCGGCAAACACTACAGCTATCCAATGCTGGCGGAATTTAGCTGACCGTAGTTGGACACGCAACATTCACCGTCGGCACCATGATCCCTCGTAGTATGCGAACAGGTGGGATGGACCTGCCAGGGGTGGAGTCAAGGGAGGTACCCCTCATTGGCTACCGGCCTTTAGCGTCTGACGATGTTCGCCTCAGCAGCCAATCAGGGCAAGTGACTGAGAGTACTGGACTGGACTCCTCTGAGGGGGAGACTTCCCCCATGAAGACAACTTGGTACTGTCCTCTGGATTTGtcTACTGtgttggaggagaaagaggacggAGTGATATACAATGTAGTGGTGAAGCAACAGCATGGCGCCCCCAACAGTGCAACAtccggctCTCGTTCGCAGTGTGTGAAGGCGGGAACAGAGGAGAAGCTGGTTCAGCACCTCCTCCACTCCTTCGCCATGGGCGACTCCTCCTTCATCAACATCTTCCTCTCCACCTATCGCTCCTTTACCTCCACCAAGAGAGTGCTGGACATCCTCATCGACAGaTTGCAACATCCACCAGGAGAAAGTACAAGGAGTCAGACTAGGCAACCCTTCAACAGagcGGTGTGTATGGTGTTCAGTATGTGGCTGTCAGAGTATCCTGAGGACTTCCGCTCTTTGGGAGAGCCTGGTCTTCTGCTGCGCCTGGCCCCCCTGCTGCCCTCCGACCCCTCTGGGACAGAGATCAGGGGTCGCCTCCTAAGACTGGCAGAGGAGCTCAGTgaacaggccctactgcctgacTCTAGTTCAGATAGGACCATCGCCAGCCCTCCTGCTGACCCCACTAAGTTTGATCCCACCAATATCCTGGGCTTCCCTGCTGGGCTGATTGCTGAGCAGCTCACCAAGATAGAGACGGAGCTGTTTGTGCGTCTGGTCCCGTACCACTGCCTGGGCTCCCTGTGGTCTCAGAGAGACAAGAAGGGCCGCGAGGGTGTATGTTGGTCCGTCCGGGCCACTGTACGCCAGTTCAACCGGCTGGCCAATGCCGTAATGGCTTCGTGCTTGTGGCCCACGCAGCTCCGCAGCCAGCAGAGAGCCTGCCTCCTGGAGAAatggatcagcgtggcagagGAATGCAGAGCCAGGAAAAACTTTTCATCTCTCTACGCCATCGTGTCTGCCCTGCAGAGTAACCCAGTACACAGACTAAGGAGGACGTGGCTAGAAACTGACAGGGAAGCAGTGAGGAGATACGAGGAGCTGTCCAACATTTTCTCTGAGAAGGACAACTACTCCCAGAGCAGGGAGCTGCTGAAAGAGGAGGGCACTTCGAAGTTCGCCAACCTGGACGGAAAGATGACCAACAGGAGACAGATAGGGtccAGTGCCCAGGGCACAGTACCCTACTTGGGGATCTTCCTCACAGACCTCACCATGCTGGACACGGCCGTCAAAGACAGACTAGAGAACGGCTACATCAACTTTGACAAGAGGAGACGAGAGTTTGAGGTTTTAGCTCAGATCCGACTACTGCAGTCCTCCTGTAAAAACTGTGTTTTCCTCACCGACGAGGCATTCCTACAGTGGTACCAAAGTGTACCCTCGTTAAATGAAGAAGAAAGcctgaattcctcCAGGACCAGCCTTGTTGCTGACAGTGACGGTCTTTTTGACTTCCCCTCCCCCGTCTGTCACTTTCTTTCCAAATTCACCAAGCATATGAAATCCCCCTCAGTTTCCTGTCTGGATGTTgactcctcccctcccaccaatGACCCCATCCCGTCTGCATTGACACCATCCACTCCCGTTAAATCACATCGTCGATCAGTCTCCTGTGGCAACAATCCCACCAATAACAACAAAGGGTCTGAGCCTGATATGCGGATCGTCAGGATACGGATGGATTTACAAGATGGGAATATGTACAGAAGCATACTGGTGACAAGCAATGACAAGACGCCCACTGTGATCAGTTCTGCCTTAGAAAAACACAGTCAGGACCCCAAACAAGCATCCAGATATGAGCTGATCCAACTATTGCCCGAGGGAAAAGAGTTGGTCATCCCTGCCACAGGAAACGTCTTCTATGCCATGACTTCCTCTAGTGTGGACTTCCTGCTGCGCAGACAAGGAGGAAACACCCCTTTTCGCTCTCAACCAATCAGCACAGAAACTAGTGCCACCTTCCCTCGAATCAAAGCCAAGGGGCGGAGACAGCTCTTTCCCAAATAGGCTATATCTGAGACATAATTTGGCTAGTGCTTCTCAAGGACAGGACACGATAAGAATGCAGGCCGATATCTCAGTGAGATGTGGCCTTGTCTTTCCTAATCTTTTTTCGAAGTGGAAAATGTATCCTGAAACCTGTCTGAACTTGTTTGATGAACGTATTCTTATCTGGGACATTTCAATAAATATGCTGCCTGTTTGTGTACACCAGGAAAGTCCATTAGTGTAGAAGGGTGCATGTCTCTCTCGTTGGCAATGCATACTACTGGAAATATACACCTAGAACAAGACCAATGCAAATCTTTAACAGATGGTGAATGATGCTGTTTTTTTAAGTCTCTCTGACCATTGGCATCTCATTTCCTATTTAACCAAATGGAATAGCCTTGTAACCAAGAGCAACGGAGGAATCCAAATCATCTTGAGTATTTGAGGAATGTGCCTCAGGTGCCATCCTATAAATGAGTTGGTAGTAGAGAACTTCATTAAATCAAAGTAGTTTGGGCGATATGACCCTATTTGAATTGACCATGACCACAACAAAGTTTTACATTTCTCCATAGAGAGTGGACACAAGCAGGAATATGAATGACGGGGAGGAGCACTGGGCTGACATTATGACGTAATGCATCTGAATGACTGACAGAGTCACCGAAACCTCTCATTATAGCAAAGCACGGGGGCTCATCAAAATGTTTTAACTATGTACTTTGTATGTAtgcatatgtttttttttaatgtatggaCGATGTCATGATTGTGTTTACATTCCCAAGGAGCTATCAACAAGTGTCAGAATGACATGTTATTCATTGTGAAGTGACATGAAATGTATGAAATTGCCTCAAACTGCAACCATTTCAAATGGGTCAAGACGTGTCAAAGATATACATGATCATTTCGCTTGGGCTTTCTGCATATATATTGAATGATAGTTCTGGTAGTATCTTGTGTAAAATACAACAAACACATTTACATATACAGCCTTGCCACTCCCATACAGAATATCGTCATATTTTGAGTACTAACCATTAGGCATAACAGCATCAACCCACAAACTCTATCCTAAACAATTCATGTGAAGACACTAATGAAAGTCCAGACTATGTTGTGCGTATTGAAAATATGTCTACCATCGCACCTTAATGCTATACTTTTCTAATACAGCATAAGCTCATCTTTATCAATGGTCTCTGAGTGGGTTTAGTTAGTAGCTGGAATGGAAGTCTGTCTGAAGAGTATTTAATCCAGGATTCCCAAAGTCAGTCCTCAAAGACCCATGCGAGGTTAGTGAGGGATTCTCACCAATCCCCGAATGATGTTTAATTGATATTTTCTCTGACGTTTGATAGAGATCTGACAGCTATTAAGGTTTCATTATGCAATGTCTTTAGTCCAGGAACTGAATGTAGCGGGTTTTGCAGAAGGCTCTGCTTCTATCCCATGAGGATGAGACCAGTAGGAAGGAAAACCTGCACGCATAAGGGCGCATGGGGGACACGTTGTCGGAGGCCCTAACTGGTGAACTCTTGTGAACTCTGGCCAGTGCTGTTGAAGTCTCTACTAAGGCTGAAGCATAGATACGGTAGttccagggagaggagagaggcttctGGGTAACGTGCTTTGATGAAGTGTTAGCGCCAGGCTAAGCTACTGATTGTTTAGTGCCTTTCTCTCATTGGTGCTTGAACCACTTGaagtgtcccaaatgtcaccctattccctgtatagtgtattacttttcaccagagccctatgggacctggtcaaaagtagtgggcttaatagggtgctatttgacaTGAAGCCTCTGTGATGTATGCATTGGAATGTACAGTACATATGATGTACATTCACAGTGCTGTATAAGCTGGCATGTTTATGCACTACATATGCCCTGTTGTTTTTGTGTGATACATTTCCCTTTTCTATGGATGCATTTTGACGTGACAGTAATATGAGGAATTTCTATGCAACTCCCAGGATGTGTGCTGTAATTCTGCTGTGTCATTTCTTATCAAATAAATGTACAAAGATGTACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154003 lncRNA upstream 74153 33593623 ~ 33593990 (+) True G133725
TU153963 lncRNA upstream 107842 33559931 ~ 33560301 (+) True G133699
TU153938 lncRNA upstream 154281 33513333 ~ 33513862 (+) True G133678
TU153937 lncRNA upstream 155350 33512312 ~ 33512793 (+) True G133677
TU153936 lncRNA upstream 158336 33509545 ~ 33509807 (+) True G133676
TU154066 lncRNA downstream 45653 33740594 ~ 33742572 (+) True G133785
TU154037 lncRNA downstream 84295 33779236 ~ 33783239 (+) True G133759
TU154128 lncRNA downstream 103919 33798860 ~ 33799090 (+) True G133844
TU154131 lncRNA downstream 107013 33801954 ~ 33802157 (+) True G133847
TU154136 lncRNA downstream 112393 33807334 ~ 33807657 (+) True G133852
XR_005036461.1 mRNA upstream 127448 33531590 ~ 33540695 (+) True LOC118939517
XM_021559622.2 mRNA upstream 207146 33434698 ~ 33460997 (+) False ntrk1
XM_021559629.2 mRNA upstream 207146 33434698 ~ 33460997 (+) True ntrk1
XM_021559607.2 mRNA upstream 259624 33406809 ~ 33408519 (+) True LOC110487688
XM_021559571.2 mRNA upstream 346309 33316290 ~ 33321834 (+) True LOC110487649
XM_021559774.2 mRNA downstream 24892 33719833 ~ 33726238 (+) True LOC110487856
XM_021559784.2 mRNA downstream 38503 33733444 ~ 33746441 (+) True tap1
XM_021559802.2 mRNA downstream 54706 33749647 ~ 33758792 (+) False LOC110487876
XM_021559795.2 mRNA downstream 55128 33750069 ~ 33758792 (+) False LOC110487876
XM_021559809.2 mRNA downstream 55128 33750069 ~ 33758792 (+) True LOC110487876
TU153923 other upstream 170858 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 498765 33167438 ~ 33169378 (+) True G133473
TU152486 other upstream 1780571 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1785070 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 2301821 31360436 ~ 31366322 (+) True eaf1
TU154038 other downstream 119092 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 267476 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 993014 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 1276699 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 1277508 34972449 ~ 34972801 (+) True G135920

Expression Profile