RNA id: XM_021559730.2


Basic Information

Item Value
RNA id XM_021559730.2
length 1867
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110487810
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33695017 ~ 33704797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcgttagTGCGAGATCCTCCACTAGGCGTTGAAGGCGCCCTGGAACAGAGCTAGCAGAAGGGTAGCTAAAGCAAACTATTGTCATTAACTCGTGACCGTAAGCCCGCCCCGTGACATCGTAGTTCAAAACAAGGATGCATCTCGACTTTAGAAATGGAATAGTTCGCCACAATCAAAGATCACGTGGATACGGAAAAGCTGTAGAATCAGCATAATTGTCAAGTTCTTATCTACTCAAAGATGTTGTCACTTGTCCTGCTGATCCTGTTTCAACCAGGAGAGGGAGGCACCTCACCTATCTCCTGTTACAATGATCAAGGGGAAGCTGTTGACTGGTTCTATCTCTACAAACTCCCCCATGTTGATCGTGAATTTCCCAACGATGGACAGAGTTATCTACTGATGGACAAAGGGAGCGAGGGATGGACGGATGGAGAAGTGTTGGTGAATGACAGCACTGGAGCCCTGGGGAGGACAGTGGGCCAGCTGTATGAGCAGGGGAAGAATGAAGACATTGCATACATCCTGTATAATGACCAGAGACCACccgaggagggaggaagaggatttGGTTTCCTTAGTAGCCGAGGTGGCCACACAAAAGgtGTTGTCTTATTGGACAAGACACAGGGCTACTGGTTGGTCCATAGCACCCCTCATTTCCCCCCTGTAAAGGAAATGGGGCAATATTCCTACCCAGGTAGTGGTGTAAAGAACGGACAGAACTTCATCTGTGTGACCTACCCACTGGAACGCTTTCAGGCCATTGGAGAGCAGTTGCAGATCAACCAGCCCAATGTGTATGACTGTGGTGTCCCTGCTTCCTTGGCCTCTCTGGTGCCCGCACTGGCTGACGTCTGTAACAACAGCCAAGGGCAGATGGCCTATAGCAACTTACCGCACACCCAACCCGCATCCAATCGCAGCGTGTCTCTCACCTCATTGGGTGGAACCGAGTTCATCAGCTTTGCCAAGGGGAGATCATTCAATAATGAACTGTACCACTCCTGGGtggctccctccctccagtcaGACCTCCTAGTCCAGTTCTGGATCCGCTCCACTGGCATCCTGCCCTCTGACTGCTCCCTGGGCTGGAAGGTCCTGGACATCCAGCTTATCTCCCCAGGCGGGAGGATCACCTTCAAGGCCTCCAACGACCACTCCAAGTGGGCCGTGAGTACCACCGGGGGTGGGGTGGATGGAGCTgctggctgggtgtgtgtggGCGACATCAACCGGAACGAggctgaggagaagagagggggcgGGACGGTGTGTCTGCAGGACGCCACGGTGTGGAAGGCCTATCGGACAGCGGCGCTGGAGTGTGAGATGTGCGGGGGAGGGACTAGCGGGTGTGATGTGGACGTAGAGGATGCAAGGCACTACCAGGGAGATATGAAGCAGTAAGCATCAGTGTAAAGTTACTAGTATGCACACAGTAGGTACCCCATAGAATGTTGATTAATAACATCTAATTCActctttttatggcagttttggagttTTTCATAAATTGCCATGAATAGAAACATATTTGAAAGGGAAGTGGCACTCCTGTAATAATTCAACAATGAGCACTTTGCTACATTCTGTGTAGTTCTATAAGTTTCTAATGACTGTAGGAAATGTTGATTGTGATCTCAGGTACATTTTATATGCTTCTGTtttcaacctttttttttttatgtagaatttgtattttatttttatgatcGTTAAAGTATGTctaatgttttttctttatttctctttTACTTTTTAGTCAAATGTTTGGTGACGTTTTCAGCTTTTAGCTTGAAACAGGCAAAGATACTGTCTTCTGTCGCAATAAAGAAAGGACTGTTGCGAGGTGCACAAATA

Function

GO: NA

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154895 lncRNA downstream 155194 33523035 ~ 33539823 (-) False syngap1b
TU154904 lncRNA downstream 165116 33523035 ~ 33529901 (-) True syngap1b
TU154875 lncRNA downstream 189924 33504843 ~ 33505093 (-) True G134490
TU154868 lncRNA downstream 206093 33488627 ~ 33488924 (-) True G134484
TU154867 lncRNA downstream 207010 33487794 ~ 33488007 (-) True G134483
TU154982 lncRNA upstream 20724 33725521 ~ 33758779 (-) True G134562
TU154977 lncRNA upstream 38155 33742952 ~ 33746685 (-) True G134557
TU155040 lncRNA upstream 84029 33788826 ~ 33789204 (-) True G134619
TU155056 lncRNA upstream 104777 33809574 ~ 33809795 (-) True G134635
TU155090 lncRNA upstream 161511 33866308 ~ 33866913 (-) True G134669
XM_021559699.2 mRNA downstream 32396 33648123 ~ 33662621 (-) True LOC110487773
XM_021559674.2 mRNA downstream 50996 33610856 ~ 33644021 (-) True LOC110487763
XM_036946399.1 mRNA downstream 104027 33525469 ~ 33590990 (-) False syngap1b
XM_021559741.2 mRNA upstream 7468 33712265 ~ 33715647 (-) True LOC110487821
XM_021559751.2 mRNA upstream 20973 33725770 ~ 33732443 (-) False LOC110487833
XM_021559757.2 mRNA upstream 21541 33726338 ~ 33732442 (-) False LOC110487833
XM_021559764.2 mRNA upstream 21541 33726338 ~ 33732444 (-) True LOC110487833
XM_021559819.2 mRNA upstream 74396 33779193 ~ 33850764 (-) False LOC110487899
TU154709 other downstream 469915 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 906896 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 943439 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 943439 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 2046222 31635320 ~ 31648795 (-) True LOC110486999
TU155089 other upstream 160691 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 899418 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 1601570 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 1969501 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 1969634 35674431 ~ 35675705 (-) False drd2l

Expression Profile