RNA id: XM_021559751.2


Basic Information

Item Value
RNA id XM_021559751.2
length 3444
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110487833
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33725770 ~ 33732444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagaggtgggtggtaGCAGCACTGGAAGTTGGGGTGTACCACTTTAGATATAAACTGTTCACATGGTCCCATTGCGAACATGGTCAGGAGCGCAGTGAGACAGTAAGTTCTCCAGAAGAGACCCAGAGAGATACCCCACAACACTGTAGCGGAGTACAGTCCTGCCGGACCTGCCATAGCTGGACCAAGGCATTGGACCTAGTAACCGCACTGGTACAGCTGGGAGGATAGTGAGAGAGAGTAGGCTACTGCCATCTCCATCCTCTCTGGGACCTGCCTGCCTTAATGATGCTGGTGATGTGGACGGCTGTTCTGTTGGGTTTGAGCAGGTGCTGTCAAGTAGCAGCAGCGTCTCCTGGTGGTGACCCCTGGGCCCAGTGTCCGTCCAGACAGTGTGAGGCCAAGTTTAGAGATGGGTCATGTGATAAAGAGTGCACCGAGCCCGAGTGTCTGAGAGACGGGTTCGACTGTCTGAGGGACAAAGGACGCTGCAATTCAGGTCACATCCACTACTGCCGAGACCACTATTCCAACTCTTACTGTGACCAGGGCTGTGAAAGTGCCGCCTGTGGCTGGGATGGGAGTGACTGTCACAGGCACCACAGCCCTCTGTGGGCTAAGGGTACCCTGCTCCTGCACACCCACGTCCCCCTGCAACACGGCACATTTTCCAACAGTTCCCTTCTCTGGGCCCTCAGCACCCTCCTGCAGACACCCCTCAAACTGCGCGGCACGGTGCCCCTTGACCCCAGCAAGGACCTCTTCACCTTTAATCCCCAGCAGCTCGAAAACCTGCTGGCTCAAGCTTCTTCTGATGACTCAAACGGTTCACTCCTATTCCTGCAAGTGGATAACAGGCCGTGCTCCCGTCTTCCTTCTACCTGTTTCCCGTACGCCATCGAAGCAGCTAACTTCCTGCGGGCTGCTACGTCATCGACTCGTGTGTCGGTCCCCTCTCACCCAGAATTAAAGGCCATTATTAGTGTAAGAGGGGTTGGGGAGgaaataggagggagagaggaggacccAGTTGAGGAAAAGGAGGACACTAATGATGGAGTAACACCTCCATGGATATGGGCTGTGATCGGCGTGGCAACGGGCCTGGTACTGGCTTTGGTCTTgattgttgtcttggtgatcagaAGGGTGAGACGACGACgagcggagagggagggaggaggagagagggttaggcaCAGATCCACTGTCACTGAGAATGACAGCGGAGCCAACGTGGCCAAGGCATGGGCACAGCACACACCCCACCGAGAGCAGAGGggcaggacagggagagagaaaggcaggaaTGGGATAAAGAAGAAGAAAGCGAAGGAGGCTGAGAAGAAAAGACGCAGAGAGCCACTGGGGGAGGATGCCCTTCGACTGCGGCCCCTGAAAAAGGACCTGGATATTGGAAGTGACACTGACTTTACCCAGAGTTCTATGGAGGACATCAACAGGTCCATCTGTGACCACCGAACGCAAGAGCAGAAGCACTACCGCAGCCCCCCGAGCCACCCACAATCACCCATACAAGCTCCACTTTTAGCCCCCCCAAGAGGATGGGAGAGAAATGCTGTCCCGTCGACACATCACAGAACACCCAATCAATCTGCTTCGGTTCAATGGTGTGGTCCAGATGGGTCAGTGGTCCTGATTCGTGCGGTCCGGAGTGGGCTTGACCGTGTGGTTCTGGAGCTGCTACGAGCTGGGGTGCCGGTCAACAACACAGACCACACTGGGAGATCAGCCCTCCACTGGGCATGCTCAGTTAACCACCTCTCCTTGACAAGAACCCTCACTCGCTACGGTGCTGCGGTGGAcctacaggacaacaagGGTGAGACTGCTCTGTTCCTCTCCGCCCTTCACGGTTGCTACGACACCGCCCGGTTCCTGCTCCTGAACGGGGCAAATCAGGATCTGTCTGATCGCAGAGGACGCCGGGCACTGGATGTTGCCCGAGAGGGCATGCATCATCAAGTCCTGGAGCTCCTATTAGCTCACAGGGTTCAGAGAGGGCCTATTCCTATGGAGCAAGCCAATGATATGCTGTGGGATGAGCATGCCTTTCTGTATAGCCAATGGGTGAATTCCCCTGGGCTCCCTGGGAGAAGTGCCTCCTTCTCTGGTGTCATAGGGCATCGGGATATGTCTTCGTCTCCACCAAGTGATTTATCAATGGGCAGAGCGCAGTGCCCTTCCCCTCAGAACTGGCGGCCACAGCTCAACCAATCAGCAACCGCATTGGTTACCCCAAGAATCATGGGGCGTCCACCAAGACCAATCAGCACTCTACAGGAGGTTACCTCAGAGGACGAAGATCGTGAAAGGCCCCAGGAAGTCCCGAGAGCAGCGACACCGCACTTCCTGTTACCCCAGCCTGCTCCTCGACAGCGGTCCTTCTCCTGTACCCAGAATGCTCTGCAGCGTCGCTCCAGTTCACAGCAGCCCGAACCGAATTATGTTGCCTTATCAGAGAAAATAGCCACTGAGCCCATAGAAAGAGTGATCGTAGTCCCTCCTACAGATGCTCCCACCCAATCAGATCGCAGATCAATAGTCGATAGTAGCGACAACCCCAGGAGGGCAGCGCCAGAGATTGAGGCAGCAAGTTTTAAAAAGGCAGAACAGAAAGCCCGAAGTGAGAAGCTAAATAACCACATGCCTGACTCTAACCAAACAGCTTTGTAAGGGGGCTCTGCTGTGAGATATCATGCTGAAATTACCCCAAATACCATCATGTCAATCATGTGCTGTTTACATTTTCTGTAAAAGGTCCCTTGCTCCTAAATAACAGTAGATTGACAGAAGGGATATAAACTCAGTCAATAAATGAGTAACTTCAATTACTCTAAATATCCAAATCAATAAACGATTAATGTGcaattttttcttcttctgccaTATTAGGAGGTGACCTGTCTCTCTTATGCTAATATCAACCAATCAAGACAAACCAACTGACTGTGAATACAGAGTCTTTATTgtaaaagaggtagagagaataCAGGTGTTTTTCACTCACTGTACAGAATGACAGCACTGTTGATATACTCATTCAAACTGTTAACATAACCAGCACACATACTTCATTCatgatatagacacacacagacaaacaagcCCAGTAGAAAagagaaaacaaacacacaaaatcTTTGGATTTTCTCTATTGCCCCCACATCCTCTAAATGCAACTATATCTGACCTTTAAACTAAAATCCTAAAATATTTGTAACAGCATTAATAATATAGCCTAATAAAACAATGGTAATGCAATTTCCCAAGCCTCCCTGCCCACATACCACAGTAACATATAAAGTAGTGGAAAACAAAACCCATGATCCCAAtacaaaacatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154895 lncRNA downstream 185947 33523035 ~ 33539823 (-) False syngap1b
TU154904 lncRNA downstream 195869 33523035 ~ 33529901 (-) True syngap1b
TU154875 lncRNA downstream 220677 33504843 ~ 33505093 (-) True G134490
TU154868 lncRNA downstream 236846 33488627 ~ 33488924 (-) True G134484
TU154867 lncRNA downstream 237763 33487794 ~ 33488007 (-) True G134483
TU154977 lncRNA upstream 10509 33742952 ~ 33746685 (-) True G134557
TU155040 lncRNA upstream 56383 33788826 ~ 33789204 (-) True G134619
TU155056 lncRNA upstream 77131 33809574 ~ 33809795 (-) True G134635
TU155090 lncRNA upstream 133865 33866308 ~ 33866913 (-) True G134669
TU155102 lncRNA upstream 146862 33879305 ~ 33880423 (-) True G134680
XM_021559741.2 mRNA downstream 10123 33712265 ~ 33715647 (-) True LOC110487821
XM_021559730.2 mRNA downstream 20973 33695017 ~ 33704797 (-) True LOC110487810
XM_036946455.1 mRNA downstream 21414 33695017 ~ 33704356 (-) False LOC110487810
XM_021559699.2 mRNA downstream 63149 33648123 ~ 33662621 (-) True LOC110487773
XM_021559674.2 mRNA downstream 81749 33610856 ~ 33644021 (-) True LOC110487763
XM_021559819.2 mRNA upstream 46750 33779193 ~ 33850764 (-) False LOC110487899
XM_021559825.2 mRNA upstream 46750 33779193 ~ 33850765 (-) True LOC110487899
XM_036946534.1 mRNA upstream 342112 34074555 ~ 34124205 (-) False LOC110487942
XM_036946523.1 mRNA upstream 342112 34074555 ~ 34134234 (-) False LOC110487942
XM_036946539.1 mRNA upstream 342112 34074555 ~ 34134234 (-) False LOC110487942
TU154709 other downstream 500668 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 937649 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 974192 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 974192 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 2076975 31635320 ~ 31648795 (-) True LOC110486999
TU155089 other upstream 133045 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 871772 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 1573924 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 1941855 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 1941988 35674431 ~ 35675705 (-) False drd2l

Expression Profile