RNA id: XM_021559846.2


Basic Information

Item Value
RNA id XM_021559846.2
length 5257
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110487926
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33887839 ~ 33945400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTCTAGTGTAATTATAAAGCACTGATTTTGAGCGATGAAAGCAGTTTTCATGTATTTCAATAAGACATATATTTTTCTATGAGCAAGGTTTGATTGACAGAAGGTTCGTTGTCGTTGCTGCCTGTTACAAGTAGTTCGTTCACCTTTTGACTTTTGCTTAACGGGTAGCTCGCTAGATACATATTTAGATAGGAAATGTATTGACAGTTGGGTATAGTCGGTGACTACTTGCTAACTAACATTAGCTGCATTGCAAGCTAACTAATGCAGCAACTGGTGGTGATGCATGGACTGAACAGTAGTCTCGTCGTTGCAGCTGGGTAGCACAACAGAATAGAACTTCGTTCTCTTTTGACAAGACTTTATCAAGCAAGAGCACAATCCATGGAACACGCGACATTAAATACCAGTCAAATATGGACCAAGAAAATGATACGGAACGTTTTTGTGCAGTTGTTATAacgaggtagctagctagcaagccaggACATTGGAGAAATACAACAGCGTTGCAAGTGAAACACCTACATAGCAGCTTGACAGCTAAGcttggtctgtctgtgtgcgtggagtGCCTATGGCGGAGTTTGGAGAGAACGACGGCTCATCTCCATCGAATACTGGGGATTCGGTGGCTTTGCCCAGTGATAATACAGACAGGAGGACGCAGTGCGAAGTATCGGTCTTCAATGGGGACTGTGGGATACCGGCAGACATGGTTGGATCAGAAACGTTACATGACAGCCCAGGGCTTGAAACCGCCAACAACTCCTCTGTCAGATTGGATTCCAAATCCGGAATACCACGCAGGAGCAGCATTATAAAGGATGGCTCGAGGCAgcgcagagagaggaagaagacgGTTTCGTTCAGCAGCATGCCCACTGAGAAGAAAATCAGCAGTGCGAGCGACTGCATCAACGCCATGGTGGACGGCTCTGAACTGAAGAAGGTCCGCTCCAACTCCCGCGTTTACCACCGCTACTTCCTCCTGGACGCCGACATGCAGTCTCTAAGGTGGGAACCCTCCAAAAAAGAGTCAGAGAAAGCCAAAATTGATGTCAAGTCCATCAAAGAGGTGCGGACAGGGAAAAACACAGAAACGTTTCGGACCAACGGAATATATGATCAGATATCAGAAGACTGTGCCTTCTCAATCATCTATGGGGAAAACTATGAGTCTTTGGACTTGGTTGCAAACTCTGCCGATATGGCCAACATATGGGTGACCGGGCTTAGATACCTGATATCCTATGGGAAACACACCTTGAATATGATTGAAAGCAACCAGAACAACATGCGCTCCTCCTGGCTCGGTGACCTCTTTGAGGAGGCTGATGCCAACAACAGCAAGCACATCAGTCTATGTGCTGCTGTGCAGCTAATTAAAAACCTAAACCCTGGTCTCAAAAACATTAAGATTGAACTCAAGTTCAAGGAGTTTCACAAATCTAAAGATAAGGTGGGATGTGGTGTGACTAAGGAGGAGTTCATTGAAGTCTTTCATGACCTTTGCACAAGACCagaaatgtatttccttcttgTCCAGTTCTCTAGCAACAAGGAATTTCTAGATACCAAGGACTTAACTATGTTTCTGGAGGCTGAGCAGGGTATGGCACAAGTAAGTGAAGACACCAGTCTGGAGGTCATTCAGAGCTATGAACCTTCCAAAGAGGGGCAGCTCAAGGGCTGGCTCTCCCTTGATGGGTTTACCAATTATCTCATGTCGCCAGAGTGCCACATCTTTGACCCTGAACAAAAAACAGTGTGTCAGGACATGAACCAGCCCCTGTCCCACTATTACATCAACGCTTCCCACAACACATACCTGATCGAGGATCAGTTTAGAGGCCCCTCTGACGTTACAGGGTACATCCGTGCCCTCAAGATGGGCTGTCGTAGTGTTGAACTAGATGTCTGGGATGGACCAGATAATGAGCCTGTCATTTACACTGGCCACACAATGACCTCGCAGATAGTCTTCCGCAGTGTCTGTGACGTCATCAACAAATATGCCTTTGTTGCATCTGACTTTCCCCTGATATTGTGTCTGGAGAACCACTGCTCTTTAAAGCAGCAGAGGGTCATGTTTCAGCACTTGAAAAAGATTCTTGGTGATAAGATTCACATGAATCCACCCTCATCTGAGGACAGCTACCTGCCCTCACCCTTTGACCTCAAGTGTAAAATCCTGCTAAAGGGGAAGAAGCTGGGCGCGATCTGCATCGGCTCGGAGGGCGAAGTGACTGATGAGGATGAGGGGGCTGAGATGTCCCAAAGAATGAACATTGAAGCCGACGAACAACAGAGCATACCACTGAAAAAGTTCCAGCTGTCCAAGGACCTCTCTGATCTGGTAACGTTGTGTAAATCGATTGCGTTCAAAGACTTCCCAACAGCTTTCCAAAGCCAGAGGCACTGGGAACTTTGCTCGTTCAATGAGGTCTTTGCCAGTCGCTGTGCCAGTGAATTCCCAGGCGACTTTGTTAACTACAACAAGAAATTATTGGCGAGAGTCTACCCCAGCCCAATGCGGATTGACTCCAGTAACATGAACCCTCAGGACTTCTGGAAGTGTGGTTGCCAGATCGTGGCAATGAACTACCAGACCCCCGGCCTGATGATGGACCTAAACATTGGCTGGTTCCGTCAGAATGGGAACTGTGGTTATGTGCTGCGACCAGCCATAATGAGGGAGCAGGTGTCATATTTCAGTGCCAACACTAAAGACTCAGTGCCTGGTGTGTCTCCTCAGCTCTTGCACATAAAGATCATAAGTGGACAAAACTTCCCCAAACCAAAAGGCTCAGGCGCCAAAGGAGATATTGTTGACCCTTACGTCTATGTGGAGATCCATGGCATCCCTGCTGATTGTGCAGAGCAAAGGACTAAAACTGTCAATCAGAATGGGGAGAACCCACTGTTTGACGAAAGCTTTGAGTTTCAGATAAATCTACCTGAGCTGGCCATGGTGCGCTTCGTGGTGCTTGATGATGACTACATTGGCGACGAGTTCATCGGCCAGTACACAATCCCCTTCGAGTGTCTCCAGCCGGGATTCCGGCACACACCGTTACAATCGCTAACGGGAGAAGTTCTTCCCCACGCCTGGCTGTTTGTCCATGTGGCCATCACCAACCGAAGGGGCGGGGGCAAGCCTCACAAGAGGGGACTGTCTGTGCGTAAGGGCAAGAGAAGTCGGGAGTATGCCACCATGAGGGTGCTGGTCATCAAGGCTGTGGACGACATCTTCAAGACAGCCATACTGCCACTGAGGGAAGCCACCGACCTCAGAGAAAACATGCAGAATGCCATAGTGCCCTTCAAGGAACTATGTGGCCTCTCGGCGGTGGCCAACCTGAAGCAGTGCATCCTGGCCCTGTCCTCCCGGCTGACAGGGGCTGACAACAACCCCCTCCTGGTGTTCAACCTCAAGGACCAGTACCCCACCATGGAGCCCCAGGGCCAGCTACCAGATGTCCTGAAGAAGGTGGTCACCACCTATGACATGATGATCCAGACCAGCAAGACTCTGCTGGAGAACTCTGAGGGAGTCTACGACCGAATACTGCTAACCCAGAAAGCAGCGATGGCGTTCCATGAGAACCTCCATGACATGGCGGTAAAGGAGGGCCTGAAGGGCAGGAAGCTGGCCAAGGCTGTGGAGAGCTTCACCTGGAACATAACCATCCTCAAGgGCCAGGCGGACCTGCTGAAGCACGCAAAGAGTGAGGTCCAGGAGAGCCTGAAGCAGATCCACTATGCCGCCCTCACCTGTAACCTCAGTAAGGACGGGCCTTCAGGGAGCACGGCGGGCTCCGAGTCCAGGGCCCGACCACGCAGCCTGGACGCCATCCCTGAGAAAGCCACGGGGGAGGACGAGCTCTCTGAGGAGGACAACTGAAGGCTTACGCCCTAAACCCTTCATACCTCCAAGCCCCTTGCCCTACCCTAGTGGCATACATAAACCTCCTTACCGCAGTCCCACTCAAACCTGACTACAGTGTACCTGTTCTAGTGCCGTTGCCACACAACTATTCTTATTCCAGTGTCGTATACAACCATTCCATTCCCACCCCAATCTCACTCAAACCTCCCTTTGCTTAACCAGGTACCACACAAAAAGCCCTTAACCCCTCCTGCCCACCTCAACGTCCAACAGCAAGATGTTGCAGGTCAACTAGGAGGGTCAAGTGAACTTGCAGCCACGGGACAGTCTTAAAGCCGTGACCTACTGTAGAGAGAGTGCACTTATTTACAGGCAGACCCCAGGGTCTGACCCTAGGAGAGCCGCTCTAAAGGGTCCAAGGATTTCTTAAGCACAATTTACGGGTTTCTGACCAACCAGAAATTAGAGCTGTGAATGTAATGGGAAACGGGAACaatggagagaaggaaagaagaaAAGGGAGGCGAGAGCTGTTTACAAGAATGAACTTGTTCTTGTCTGCCAAAATAGTATCTTTATATATGGAGTTCTGTTACTTTTTTTGCAGCGTGCttcattttattattatattcttGAGAAATAAGATTTATTTTGTAAAGGAAATGGCTTGTCCATGAAAAATAACTATTTTatttgtttgtacaaatgaaatTGTGGTGTCCTTTACACTTTCCCACTGGAGAGTTCCTTTGTCGAGACGAGGGACGGATAGAGACTTTCAACCTCAGTGTGTGGTCCAAAGGGTGGCGCAACTGCTTAGGGAAGGAACCATGGAGAGAATAACTTGTTAGGTCTACGTTTTGGTATCATTTCACCATTCCACGTGAGAGGCTTGAGTAAGGTGTACAAAGTAATAATAGCTTCTCAACCCGTCCTGGTAACAAACTAGCACCCTATTCATGAATACGGTTTCATATATGACTGTGCCTCATTGCTACCAATCAGTCAACAAAAGGGATGGATGGTGAGGAAAGAGATGCTCTTCCTCACATCCCTCTTTAATCTGCTTTTGCCCACCAGTTGCTTCTAGTTTGTATTTTGTTCATTCTCTCCACAGTGCTGAAACAGCGTTGCTCCTGGTCAACTTTAGCCACCCACCGCCACCTCTGGATCTCACCCACCAGTGTTTTAACTGGGCCCACACTGAGACAAAAAGTTATTCAGAAACGTCAGTGCTGTGACTGTTGTATTTATAACTGTTGTTAACCATTTTTACCGATGGagagaaaaagaagaaaaaaataccgGTTTTGCTTTTCTGTTAATTCCTGAAACCTTCAGAATAAACCACGTTAAATCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154187 lncRNA upstream 15897 33868445 ~ 33871942 (+) True G133896
TU154185 lncRNA upstream 19846 33867491 ~ 33867993 (+) True G133895
TU154174 lncRNA upstream 37030 33850215 ~ 33850809 (+) True G133886
TU154172 lncRNA upstream 37073 33850215 ~ 33850766 (+) False G133886
TU154171 lncRNA upstream 37123 33850215 ~ 33850716 (+) False G133886
TU155191 lncRNA downstream 38822 33984222 ~ 33984490 (+) True G134764
TU155259 lncRNA downstream 83051 34028451 ~ 34028684 (+) True G134832
TU155262 lncRNA downstream 84793 34030193 ~ 34030403 (+) True G134835
TU155298 lncRNA downstream 105527 34050927 ~ 34051219 (+) True G134871
TU155327 lncRNA downstream 127644 34073044 ~ 34073262 (+) True G134898
XM_021559836.2 mRNA upstream 7731 33873905 ~ 33880108 (+) True LOC110487915
XM_021559802.2 mRNA upstream 129047 33749647 ~ 33758792 (+) False LOC110487876
XM_021559795.2 mRNA upstream 129047 33750069 ~ 33758792 (+) False LOC110487876
XM_021559809.2 mRNA upstream 129047 33750069 ~ 33758792 (+) True LOC110487876
XM_021559784.2 mRNA upstream 141398 33733444 ~ 33746441 (+) True tap1
XM_036946589.1 mRNA downstream 219286 34164686 ~ 34169250 (+) False LOC118939520
XM_021559952.2 mRNA downstream 231643 34177043 ~ 34185964 (+) True LOC110488005
XM_021559979.2 mRNA downstream 341050 34286450 ~ 34317474 (+) False ube2e2
XM_021559985.2 mRNA downstream 351596 34296996 ~ 34317474 (+) False ube2e2
XM_021560004.2 mRNA downstream 372208 34317608 ~ 34324592 (+) False LOC110488035
TU154038 other upstream 73356 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 390554 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 718461 33167438 ~ 33169378 (+) True G133473
TU152486 other upstream 2000267 31857648 ~ 31887572 (+) False G132342
TU155162 other downstream 17017 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 742555 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 1026240 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 1027049 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 1039572 34984972 ~ 34996796 (+) False LOC110488281

Expression Profile