RNA id: XM_021560069.2


Basic Information

Item Value
RNA id XM_021560069.2
length 2333
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110488078
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34384506 ~ 34396588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAATCGCAGTACGCATTGTATCTGGCGTACTCTCCGTTGTTCAGGTGTGACATTACGTCGGCCACAGTACGTAGGTATGCGCTAGTGAGAAGGGGAATGTCGGGTTGTGAATGATCGGTTTCTGAGCGGCAGCAAAACGTCAACATTATGGCTCAACAAAAGAATCTGGAGGGGTATGTGGGCTTTGCTAGCCTTCCCAACCAAGTGTACAGAAAGTCGGTGAAGAGAGGCTTTGAATTCACCCTGATGGTTGTTGGTGAATCAGGATTGGGCAAGTCCACGTTGATCAACTCTCTGTTCCTAACAGACTTGTACTCTTCAGAATACCCTGGGCCTTCACACAGAGTCAAAAAGACTGTACAGGTGGAGCAATCCAAAGTGTTAGTAAAGGAAGGTGGTGTCCAGCTCCTGCTCACAATAGTCGACACCCCAGGATTCGGCGACGCTGTGGACAATAGCAACTGCTGGCAGCCGGTCATCGACCACATAGACAGCAAGTTTGAGGATTACCTCAACTGTGAGTCGCGGGTGAACAGACGACTGATGCCTGACAGCAGAGTGCAGTGCTGCCTCTACTTCATCGCCCCCTCGGGACACGGACTGAAGCCTCTGGATATTGAGTTTATGAAACGGTTGCATGAGAAGGTGAACGTCATCCCACTGATCGCAAAAGCAGACACTCTCACCCCAGAGGAGTGCCAACGGTTCAAGAAGCAGATCATGCGGGAAATCCTGGAACACAAAATCAAGATCTACGAGTTCCCAGAGACAGATGATGAGGAAGAGAACAAACTGGTGAAGAAGATCAAGGACCGTCTGCCCCTGGCCGTGGTGGGCAGTAACACCATCATCGAGGTGAACGGGAAGAGGACCAGAGGACGACAGTACCCATGGGGAGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATCCTACGAGACATGCTCATCAGAACCCACATGCAGGACCTGAAGGACGTGACCAATAACGTCCACTATGAGAACTACCGTAGCAGGAAGCTGGCAGCCGTCACCTACAACGGACAGGACAACAACCGGGTCAAGGGTCAACAGTCGACAAAACATGACACAGGTGAAGGCATGAGCCCCCTGGCTCAGATGGAGGAGGAGCGGCGGGAGCACGTGGCCAAGATGAAGAAGATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAGGTCAAGGAGAAGATCCAGAAGCTGAAAGATTCCGAGGCTGAGCTGTCGAGGCGTCATGAGCAGATGAAGAAGAATCTGGAGGCCCAGCACAaggagctggaggagaagagACGCCAGTTTGAGGATGACCGGGCCAACTGGGAGGCCAATCAGCGCCTGGAGCAACAGAGACTGGATGCCTCCAGGACTCTGGAAAAGAACAAAAAGAAGGGGAAGATATTTTAGACAGTCTGCAGAAACACCAAGTTGTACTTGTTGCCAGCTTGGATATCTATGTGTGGCACCAAAGCTCTTGTACAGCCCAGCTGGGTCTGCATGTACTGTCACAATGACCGGAAGAGAGCTGCCTGTGGACTTCTCCAAGGAATGTGTTTACCTTAACCAAACGTACCGTCTTAGACAGGCCAAACCCATATATAACTGAATACTGCCCAAGGTTGCAATGTCTATTTAACAACTGATTACTACAGTTTTATGCAGAGCAACAATCATGTTTCAGTGGTTTAATTTGTTTACATGCACAAAAGCTCTTCCATGATGTGGAAAAGGAAATGGCATTTccaaaaactgtttttgtttagtaAAGTGTAACAGATAAACCTCATACTGAACAGCTCCCCATGCAATGTAGCCTAACAGGAAACGACAGTCTCGGTCTCTCAATAGGAGGAATGGGAAATCTAAAAGAGGCTAAAATGCACCttgggctttttttttttttatggctgAAGCTTTTTCCAAAATGTAACGCTTTCTTCTGTTTTTAGCAAATTTCACTAGCCTTGGACCACCATTAACTtcataaatgttatatttcagtttatttttatatatatacaccgAGCCAGCTAaagtcctttttttttttttttttttttgtatgtaaGAATTCGTCTGAAGCTTTGACCCGTTTCTGAGGAGGATTGACTGTTTAAAATACATTCAGTAGTCCTACAAAGAGCagaaaaaataaatgaaaggAATATTTCTGTGACTCCACATGTCATCAGATTAAGTGGGAAAGGAAAGTCAACACCATATTTTGCTTTGCCTATGTACTCCATCTGTATTTGTTATTTGTATTGTACAAAGTCACTTAATAAACATGTGATAGACTTGCAATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155742 lncRNA upstream 17462 34366732 ~ 34367044 (+) True G135261
TU155476 lncRNA upstream 55870 34276292 ~ 34328636 (+) True G135023
TU155477 lncRNA upstream 67041 34279641 ~ 34317465 (+) True ube2e2
TU155414 lncRNA upstream 214079 34170099 ~ 34170427 (+) True G134970
TU155415 lncRNA upstream 219310 34164350 ~ 34165196 (+) True LOC118939520
TU155791 lncRNA downstream 11564 34408152 ~ 34408477 (+) True G135295
TU155813 lncRNA downstream 72301 34468889 ~ 34470198 (+) True G135316
TU155852 lncRNA downstream 113892 34510480 ~ 34511713 (+) True G135341
TU155892 lncRNA downstream 157985 34554573 ~ 34555365 (+) True G135380
TU156221 lncRNA downstream 341694 34738282 ~ 34738494 (+) True G135671
XM_036946627.1 mRNA upstream 18218 34350218 ~ 34366288 (+) True LOC110488056
XM_021560024.2 mRNA upstream 48635 34327950 ~ 34335871 (+) True nr1d2a
XM_021560004.2 mRNA upstream 59914 34317608 ~ 34324592 (+) False LOC110488035
XM_021559996.2 mRNA upstream 59914 34317660 ~ 34324592 (+) False LOC110488035
XM_021560013.2 mRNA upstream 59914 34317877 ~ 34324592 (+) True LOC110488035
LOC110534788 mRNA downstream 1726 34398314 ~ 34405885 (+) True LOC110534788
XM_021560106.2 mRNA downstream 26802 34423390 ~ 34432224 (+) False LOC110488092
XM_021560130.2 mRNA downstream 26803 34423391 ~ 34432224 (+) False LOC110488092
XM_021560124.2 mRNA downstream 26818 34423406 ~ 34432224 (+) True LOC110488092
XM_021560143.2 mRNA downstream 36191 34432779 ~ 34464593 (+) False LOC110488114
TU155162 other upstream 421848 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 570023 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 887221 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1215128 33167438 ~ 33169378 (+) True G133473
TU152482 other upstream 2501433 31857686 ~ 31883073 (+) True G132342
TU156107 other downstream 291367 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 575052 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 575861 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 588384 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 601808 34998396 ~ 35000555 (+) True LOC110488281

Expression Profile