RNA id: XM_021560106.2


Basic Information

Item Value
RNA id XM_021560106.2
length 4236
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110488092
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34423390 ~ 34432224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATTTTGGTGTAACATGAAAACAAGCACGGCTTAGGTTTGTGTTCGCCACAAGTTACCACATCCACAAAATCATAAAgcccgcctatttctacaatttatcttcttaaaatgtgagtTTAAACCTAACCACACCGCTACctttatgcctaaccctaaccttaaattaagaccaataAGCAAATATTTACATGACATTTTACGATATAGGCCATTTTGACTTTGTagttgtggtaactagtggacaCCCAGTTTTGATCATGTTGACATGTCTGTAGAAATGTTATACCAAGTTGTAAACAGCAAGAGAATTCTCCCGGACAGAAGCTCTTCCATATGAACAATGAGTGGCTCAAAGCCAGACATTTTGTGGTCTCCCCACCACGCGGACCGCTATGTCATCTGTGACTCAGAGCTTGGACTGTACCGCATCGGACCTGTGGGGAGCGGCGAGACCAAAGCCGgagctctccccctctctgtggaGACCGCTGCTACCCTATTAGCGATCAACTCAGACACCCCATACATGAAATGTGTGGCCTGGTACCCAAAGCACGAGCCTGAATGTCTGCTAGCAGTTGGACAGGCTAACGGCAGGGTAGTCCTCACTAGCCTAGGCCAGAGCCACAACTCCAAGTGCAAGGAGCTGATGGGGAAGGAGTTTGTGCCCAAGCATGCACGTCAATGCAACACCCTAGCCTGGAACCCTGTGGACAGCAACTGGCTAGCCGCCGGGCTGGACAAGCACAGAGCAGACTTCTCAGTGCTCATATGGGACATTAGCAGTAAGTTCTCCCCAGAGGCTAGTGTAGCCGCTGAAAAGATCCGTCTCTCGTCAGGAGACACAGACTCTGGCCTAGTGGTGACCAAGCCCCTGTATGAGCTAGGCCAGAACGATGCTTGCCTGTCCCTCTGCTGGCTGCCCCGCGACCAGAAGCTGCTCCTGGCTGGCATGCACCGCAACCTGGCCATCTTTGACCTGCGCAACACCAGCCAGAAGACCTTTGTCAACACCAAGGCCATACAGGGTGTGACAGTGGACCCCCACTTCCCCGACCGCGTGGCCTCCTTCTTCGAGGGCCAGGTGGCCATCTGGGACCTGCGCAAATTTGAGAAGCCAGTGCTCACGCTCACCGAGCAGCCCAAGCCGCTCACCAAGGTGGCCTGGTGCCCCACGCGTATGGGCCTGTTGGCCACGCTAACGCGTGACAGCAACATCATCCGCCTTTACGACATGCAGCATACGCCCACGCCCATTGGCGACGAGACAGAGCCCACGATCATCGAGCGCAGCGTGCAGCCCAGCAACAGCCTCATTGGCAGCTTCGCCTGGCACCCCACTTCCCAGAACCGCATGGTGGTGGTTTCGGCTGCCAACCGCGTCATGACTGACTTCACAGTGTTCGAACGTATCTCTTTAGCCTGGAGCTCCACCACTTCGCTCATGTGGGCCTGCGGCAGGCACCTGTACGAGTGTGCcgagggggtgggaggggagggtaCAGTAGAGAAGGACATAGCCACTAAGATGAGGCAGAGGGCACAGTCCAGGTACGGTCATGATACGGTCCAGGTGTGGAAGAACCATTTGCTGGCCGGAGGGGACGACCCCCAGCTCAAGTCCCTGTGGTACACTCTGTTCTTCATGAAGCAGTACACTGAAGACGTGGAGCAGAAACAGCAGGGGAGCAAACAGGCCCTGGTCTATTCAGGCATCAAGAACATAGTCAAGTCCAGCTCAGGCACTACAGAGAACCGGCGGTGCTGGAGCGGCTCAGACCGCCAGACGGACGTCCCCAGGTTCCACAGCGAGGAGCGCAGCCTTGCCCTTCGTCTGTGCGGCTGGATCAACCGAGGCCCCGACATCAACGTGGAGCCCTTCCTGCGCTCCCTGGAGGGGGAGGGCGAGTGGGAGCGTGCGGCCGCCGTGGCCCTCTTCAACCTGGATATCCGCAGGGCCATCCAGATCCTCAACAAGGGAGCCTCCGCTGAGCGAGGCGACCTGAACCTAAACGTGGTTGCCATGGCGTTGTCAGGCTACACGGACGAGAAGAGTTCCCTGTGGAGGGAGATGTGCAGCTCTCTGAGGCTGCAGCTCAAGAACCCCTACCTGTGTGTCATGTTTGCCTTCCTCACcagtgagcctggcacctacgaCGGAGTACTGTATGAGAGTAGTGTGGCCGTAACGGACCGAGTGGCCTTCGCATGCATGTTCCTTAATGACGCACAGCTGCCTCGCTACATGGAGAAGTTGACCAGTGAGATGAAGGAGGTGGGGAACCTGGAGGGGATCCTGCTGACGGGGCTGACCAAAGACGGAGTGGACCTGATGGAGAGCTACGTGGACCGGACCGGAGACGTCCAGACCGCTAGCTTCTGCATGCTCAAGGGTTCCCCAGGGGAGGTGGTGAAGGACCCGCGTGTCCAGTGCTGGATCGAGAACTACCGTAACCTGCTGGACGCATGGAGGTTCTGGCACAAACGGGCTGAGTTTGACATCCACAGGAGCAAGCTGGACCCCAGCTCCAAACCACTGGCACAGGTGTTTGTGAGCTGTAACTTCTGTGGGAAGTCCATATCGTACAGCTGTTCGGCCATGCCCCACCAGGGCCGCGGCTTCAGCCAGTACGGGGTCAGCGGCTCGCCCACCAAGTCAAAGGTCACCAGCTGCCCCGGCTGCAGGAAGCCCCTCCCCCGCTGTGCCCTCTGCCTCATGAACATGGGCACGCCTGTGTCCAACTGCCCAGGTATTGGACATGGCACGGGGAAGTCCGATGAGAAGGTGGATCTGACCAGGGAAAACAAATTGGCCCAGTTCAACAACTGGTTCACCTGGTGCCACAACTGCCGACATGGCGGCCACGCAGGTCACATACTCAGCTGGTTTAGGGACCATACAGAGTGTCCAGTGTCGGCCTGCACCTGTAAGTGCATGCAGCTGGACACCACAGGAAACCTGGTGCCTTCAGACAGCCACTAGAGGGGCCTCTGGTAGGGTCCACAGCCTAACCACCAGCCTAAAACCTGCCTGTGCACTCTCACTACACTACGGCACCCACCAGTCGACACACCCCAGACTAAGCCAGGTTGCTGGGTACTGTTCTGGACAGGCCGCTTGAATAGTGTTAACACTGGGTGATCGCTTGAGTTGAATAAAAACGTACCATCTTTTCATAATCATATGGTAAGAGAGGCTAGATGTGTTACTGATGAATCAATGAATGTCTTGAACGATTGTGGCTTGATGCTTACTAATGACATTAAGGAGATCCTTAAAGGGATATATTATGAAGGTTGTGTTATAAACGGCCTCCTCTAACCAAACCTGAATCAGGATGATCCTTTAATTCCTAGCATTAGCATATAGCCTTCATTTCCCCTATTCCTTTAATCAGACAGCAGGTAAAGGATATGATTGTGTGCCAATATATTGTAGCTATGTTTTAAGACATTTTTTCAAGCTTTCTTTCTAGGTCACAGTCAGACTGAGATATCTCGAAAAACATTGACAAAGTGATGAAAGAAGGAAGTTAGTTACCCCAGGCAACAGAAAGAGAACAAATTGacaatgctctctctcttctgGTTACCCAGGCCTGTGCCACTCTTCATCTCACTTTGTATGTTAGGGCTTACAGTGCAGGGGCAGGGAGGGGGGAAGTTGTCTGTGTATTCACCTCCCCTCTCCCGGCCTGTGTCTTGTGAAAAGAGGCAGAGAAAAAACAGCAGCTGCTCGGCACTCCGACAAGACCCTCCAGATTGTTCTCTTCATAAAGAACTTCAGCTGCCGGAACACCACTGAACACCATTGACTCAAAGAGGGCGAGAGCTGGAGAGCGAGAAGGCTCTCGGTCCTCTCTCCCCGGGCCAAAATCGCGCACAAAATATGCATACTACACATCAATCCGGGATGGGTGTCCAGACGTACTCCACAGGGACGGCTATGTGTAAGCTGCATTGTAAatgtgtttctctttctctgccttccCCCCATTGGACTCTACTGCTTCGACTTGGGGAACCATTGTAAGTGAGAGGGGCCTGCACCCGAGCTGGCTAAATCACTTAGTCATGGAGTAGGGAGGGGGCATGTGAGCTACTGTATTCTGTTTTTCACCACTGTCTCTCAGCGTCGGATGTTTTATGGTGTACCCTTTTGTGAACCATAATGGAGTGGATTTGGCAAATTTGGTAGGAGTGTACCGTTCTGAATAAAAAAGTTACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155791 lncRNA upstream 14913 34408152 ~ 34408477 (+) True G135295
TU155742 lncRNA upstream 56346 34366732 ~ 34367044 (+) True G135261
TU155476 lncRNA upstream 94754 34276292 ~ 34328636 (+) True G135023
TU155477 lncRNA upstream 105925 34279641 ~ 34317465 (+) True ube2e2
TU155414 lncRNA upstream 252963 34170099 ~ 34170427 (+) True G134970
TU155813 lncRNA downstream 36665 34468889 ~ 34470198 (+) True G135316
TU155852 lncRNA downstream 78256 34510480 ~ 34511713 (+) True G135341
TU155892 lncRNA downstream 122349 34554573 ~ 34555365 (+) True G135380
TU156221 lncRNA downstream 306058 34738282 ~ 34738494 (+) True G135671
TU156236 lncRNA downstream 324407 34756631 ~ 34757180 (+) True G135685
LOC110534788 mRNA upstream 17505 34398314 ~ 34405885 (+) True LOC110534788
XM_021560069.2 mRNA upstream 26802 34384506 ~ 34396588 (+) False LOC110488078
XM_021560080.2 mRNA upstream 26802 34384506 ~ 34396588 (+) True LOC110488078
XM_036946627.1 mRNA upstream 57102 34350218 ~ 34366288 (+) True LOC110488056
XM_021560024.2 mRNA upstream 87519 34327950 ~ 34335871 (+) True nr1d2a
XM_021560143.2 mRNA downstream 555 34432779 ~ 34464593 (+) False LOC110488114
XM_021560149.2 mRNA downstream 555 34432779 ~ 34464593 (+) True LOC110488114
XM_021560187.2 mRNA downstream 194137 34626361 ~ 34634974 (+) True LOC110488146
XM_021560203.2 mRNA downstream 212211 34644435 ~ 34646777 (+) True vwde
XM_036946724.1 mRNA downstream 255885 34688109 ~ 34689753 (+) False si:dkey-30e9.6
TU155162 other upstream 460732 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 608907 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 926105 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1254012 33167438 ~ 33169378 (+) True G133473
TU152482 other upstream 2540317 31857686 ~ 31883073 (+) True G132342
TU156107 other downstream 255731 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 539416 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 540225 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 552748 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 566172 34998396 ~ 35000555 (+) True LOC110488281

Expression Profile