RNA id: XM_021560149.2


Basic Information

Item Value
RNA id XM_021560149.2
length 3812
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110488114
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34432779 ~ 34464593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTTTATCAGCCAGTAGTCTTGCGGATACAACTGTCATTTACAGTGGACATGGGGACGGTAGGGAAGCGCCAAAGATTAGGGAATATGTTTAGCTAACTGTATAAATTAAGTTTGTAAAACAACATATATTTAAAGTTATCGACAAAACATGCACAAAGAAGACTTGTTTTAGTGTTCTTCAGAAGCGGATATCTTGGCGATTTTTTTCCTGAAAGTGATACGAAGCAGCAGAATGTCAGTTCCCACCAACTCGCTTCAACAACAGTCCACAGTCAGACGTAGCAATGCAGGGTCCCCCAGTTTATCCAACAGCTGCCGTTTGCACCCCATCCGTGCTACCGTGCCCTACCAGCTCCTACGCGGGGGCCAGAGCAGCCCGAcacgctctctgcctctctctgttggAGGCAACAATGGACCGACAAATAGCCGCGGGTCATCTCCCCCAAGTGCGACACTGAATCTTGGAGTAAATTGCACTGGCGCCACGAGACAGAGACTGTCTCCTGAAAATAGGGTCTCGCACTCACCTGACCGGAGTCCAAACTCACCCGTTTGTAGAGGAGAGAGGTCCAAACTGCAGGTGCGTAGCTCCAGTGCTATCCGGCGGACATCTTCCCTGGACGCCATTATGGGGCCGTACCTCGCAGGCCAGTGGCCTCGTGACTCCCACGGACCCTACCCTTCCTGCATGAAAGACAAAGCCACACAGacATCTGGTCTGTGGATAGAGGAGGCTGGAGGGGAGCAGGGAAGCCCACACCAGCGGTCAGCTTCCTGGGGTAGTGCAGACCATCTGAAAGAGATTGCTAAACTCAGGCTGCAGCTCCAGCGCAGTAAACAGGTCAGCCGCCAGAGCAAAGACCGAGATCAACAGCTGGGACTACACACCAGCACCACATACCATCCCCAGAATAAGGTGGTTTCCACAGCGCTGTCGAACATCCCAGTGCCAAAGTCCCTCATATCGAGAGTGCCTAGCAGTGTGGAGGGCATCAACCACGAGCTGGAGAATGTGTTCATCAGAGAGGACTGGAAGCAGGGAATacagGCTTTGGACGTGTTGGATGGCCGCCGCGCCCCCTTTCAGCCTCATCGCTACGGCAATGGCGGTGACACACGTGACACGGACACCCAGGCCCCCTCTAGTGGCGGTTCCAGCCCCTGGGCCTGCCCCTTCACTCCTGACCCCCTCCACTCCCCAGAAGGCAGCCCCTGCTCTGCAGAAGAGCTTGACAAAGACAGCGGCTGCGGCTCTCCCCTTCCCAAGTTTGCCACCTCTCCCAAACCCAACAACAGCTACATGTTCAAACGGGAGCCTCCGGAGGGGTGTGAGAGGGTCAAAGTGTTTGAAGAGATGGTGTCTGGTGTCTCCAGAGGCTTCCCTCTTTTTTCATGCCCAGACAAAAACAAGGTGAACTTCATCCCCAGGGGCTCCGCCTTCTGTCCCGTCAAACTCCTCTGCTCCTCCCACTTCACCACAACCTCGCCCAGCCCTGGTCTCCATGCAAGAAGCAGCACATGGCCCGAGGACGCCATGACACCCGCTAGTTTCACTACTCTGGCCTCCACTAACTGGAGCTCGTCTAtaggcacagacatggtcagtAGCTCAGACACAGGCGTAGGCACCAACACAAGCACAGAGAACAGCACAGACAGTCTGAGCCCAGACACTAACACAGACACGGGTGAACTGACAAGCACAGCAGTGGTCCCAGGTGGCCTGTCTACAGATCCCTGCTCCACTACACACATCCTTCTTACCAGCTAGTTCTCAGGTACAGTCCAGCTTATGagcattagcctggtcccagatcagtttgagcTGTCTTGCTAACTCCTATGGTCGCAATGACCATAGTAGGTAGCAAAACAGCacaacagatctggaaccaggctagctGAGTATGGCTCTTTAACGCAACATTAGCCAGCAAGGAGGGCCTATCCTTACTAACCTAGCCTTCTCTTCTGAAAGGTGTGGCAGGCAAAATCCTCCAGAAAGACTTGTTTTCTTTTCAGAGGGTAGATTCGATTGTTTCATATATTGTGTTCTTTAGCAATCATCAGCTTTATCAAAAATCAATTcaagaaattgagaaaaaaaaagggAATTAAGCAATGGGCAAGAGAAACATATTTTATTGAATTTTGAAAATGTTTATCTAACCAGCTTATTTAGCTGTTCTGTGTTGCTAGCCAATATTACAGCATGGATAAGCTTtttaatataaaataaatatcatGCCTGTTTATATTAAAAACCCTATTGGGATGTCCTACAGTTACAATACAATGGTCCACTTTTTCCTGAATGTTTACACTTATTTCAGGTCTCAATCCAGTTTTAAAGACGATCTGAAAGTGACCACACAGCCAGCTACAAAGCACAATGTCCCCACATAGCCTTCTTTCAGGTCCCCTGAATAACCAATCAACTCAGGTCATTTGGAATGTACTACGACTCATGCATGAACTTTGACGTTGTCTTTTATGGTTCATTCATGACATTACTCCTAAGACATTCCATAGTCTTTAGACAAGTGCTGATTCTAATCTTTCAACACGACATATTAAAGGATTGCCATCGATAGAAATAACTTTGTGCATTGGAAATCTGTAAAGATAGTTTCAAGTGCTTAAAGAGACATTCCAGAGGTTATTATATTGTAGCTCCAAGATATCAGCAGTATTACCTTTTCAGAGCCTGTTCAATCTCCCTAGTGATGAAATTGATAAATATGAGCTATGACATTTTACCAATAAAATTGATCAAaataaggcctagattcaatcggATTAAGTGTTGACCAGCGTTGTCTTGAGTTTTGGCGGCGTCAGGTGTTACtgcgttggagctgtcaaatcggtgaACAAATGCTCCTGTgatcattgtcacgaagccaTACTCGTCTCACTCGCGATAGAAGTTCAGAaagagaaagtgtaggctatatagaaataatgaaaTTATTATTAATTATCAAATTGGAAAtcactaaacaaaataattagcatttctatcagcctaatcgaggtttagattacatctcacaatccagtgttcgaacttgtaaacaaggctacATGGGATTTCTCTCAATGCGTCTccatgcagccaatggcaatgtccgctttaggtataaCGCCGggagccgcttgtggatttgacagctctaatgcgGGTGTTGGCTAGTGCGCATCTGATAGAATCTAGccctaaaaaaaaatgttaagcatcaacaacaacaaaaaatagcaAAGCCGAAAGTTTTTAAAAAACTAAATAGATAAGCAATCACACACTTATAATTCTGTCAATCAGAATTAACATTGAGGCTAATGAGATTTTCAAAGCACTTAATTCGTGCAATTCCACAGATCTGTTAAAAATAAACTGAGTATCTTAGTGTTGATTTGACGTTCAGTATGGAGTAGAAATTTTCATGAAACTGTACAAGGGTTGGATTCAATCCTTAAGTAGCGCGGGAACGTCGCCTTTAAATATAAATCGAGCTATAACGTGGACCTCCCCCGATTAAATCCAGTCCATTACGTTAAAACCCCTTGGcattaatataaaaaaatattttaagtaACAACAGGCAAAACCAACATATGCAACACAATCCACTCAAACCTAGATGTATATTTTGTCAGTAAAGATGAACGCTGCTCAAATCATACTAACATATTATTTTCAAAGTTCAGCAAGGCTTGCCATGTTCGGCACTAATATTTCATGCCTGTGTATTTGTTTTATATGTAGACCTTGTTTTTACAATAAAGTAAGCAATAAAATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155791 lncRNA upstream 24302 34408152 ~ 34408477 (+) True G135295
TU155742 lncRNA upstream 65735 34366732 ~ 34367044 (+) True G135261
TU155476 lncRNA upstream 104143 34276292 ~ 34328636 (+) True G135023
TU155477 lncRNA upstream 115314 34279641 ~ 34317465 (+) True ube2e2
TU155414 lncRNA upstream 262352 34170099 ~ 34170427 (+) True G134970
TU155813 lncRNA downstream 4296 34468889 ~ 34470198 (+) True G135316
TU155852 lncRNA downstream 45887 34510480 ~ 34511713 (+) True G135341
TU155892 lncRNA downstream 89980 34554573 ~ 34555365 (+) True G135380
TU156221 lncRNA downstream 273689 34738282 ~ 34738494 (+) True G135671
TU156236 lncRNA downstream 292038 34756631 ~ 34757180 (+) True G135685
XM_021560106.2 mRNA upstream 555 34423390 ~ 34432224 (+) False LOC110488092
XM_021560130.2 mRNA upstream 555 34423391 ~ 34432224 (+) False LOC110488092
XM_021560124.2 mRNA upstream 555 34423406 ~ 34432224 (+) True LOC110488092
LOC110534788 mRNA upstream 26894 34398314 ~ 34405885 (+) True LOC110534788
XM_021560080.2 mRNA upstream 36191 34384506 ~ 34396588 (+) True LOC110488078
XM_021560187.2 mRNA downstream 161768 34626361 ~ 34634974 (+) True LOC110488146
XM_021560203.2 mRNA downstream 179842 34644435 ~ 34646777 (+) True vwde
XM_036946724.1 mRNA downstream 223516 34688109 ~ 34689753 (+) False si:dkey-30e9.6
XM_036946727.1 mRNA downstream 223516 34688109 ~ 34692286 (+) False si:dkey-30e9.6
XM_021560237.2 mRNA downstream 228017 34692610 ~ 34695204 (+) False arl4aa
TU155162 other upstream 470121 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 618296 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 935494 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1263401 33167438 ~ 33169378 (+) True G133473
TU152482 other upstream 2549706 31857686 ~ 31883073 (+) True G132342
TU156107 other downstream 223362 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 507047 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 507856 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 520379 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 533803 34998396 ~ 35000555 (+) True LOC110488281

Expression Profile